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  5. Cre03.g174500

Cre03.g174500


Description : Homeobox-DDT domain protein RLT1 OS=Arabidopsis thaliana


Gene families : OG0001590 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001590_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre03.g174500
Cluster HCCA: Cluster_75

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00058p00137050 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.02 OrthoFinder output from all 47 species
AT1G28420 HB-1 homeobox-1 0.01 OrthoFinder output from all 47 species
AT5G44180 No alias Homeodomain-like transcriptional regulator 0.04 OrthoFinder output from all 47 species
Adi_g012033 HB-1 component *(RINGLET/RLT) of ISWI chromatin remodeling... 0.03 OrthoFinder output from all 47 species
Adi_g081134 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aev_g17892 No alias component *(RINGLET/RLT) of ISWI chromatin remodeling... 0.02 OrthoFinder output from all 47 species
Ala_g02721 No alias component *(RINGLET/RLT) of ISWI chromatin remodeling... 0.07 OrthoFinder output from all 47 species
Ala_g14571 No alias component *(RINGLET/RLT) of ISWI chromatin remodeling... 0.03 OrthoFinder output from all 47 species
Als_g14029 No alias component *(RINGLET/RLT) of ISWI chromatin remodeling... 0.03 OrthoFinder output from all 47 species
Als_g63176 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g21500 No alias component *(RINGLET/RLT) of ISWI chromatin remodeling... 0.01 OrthoFinder output from all 47 species
Aop_g10630 HB-1 component *(RINGLET/RLT) of ISWI chromatin remodeling... 0.05 OrthoFinder output from all 47 species
Aspi01Gene48323.t1 HB-1, Aspi01Gene48323 component *(RINGLET/RLT) of ISWI chromatin remodeling... 0.02 OrthoFinder output from all 47 species
Aspi01Gene65117.t1 Aspi01Gene65117 component *(RINGLET/RLT) of ISWI chromatin remodeling... 0.02 OrthoFinder output from all 47 species
Azfi_s0575.g078069 HB-1 component *(RINGLET/RLT) of ISWI chromatin remodeling... 0.02 OrthoFinder output from all 47 species
Cba_g11293 No alias component *(RINGLET/RLT) of ISWI chromatin remodeling... 0.01 OrthoFinder output from all 47 species
Ceric.16G048200.1 HB-1, Ceric.16G048200 component *(RINGLET/RLT) of ISWI chromatin remodeling... 0.02 OrthoFinder output from all 47 species
Ceric.38G016400.1 Ceric.38G016400 component *(RINGLET/RLT) of ISWI chromatin remodeling... 0.01 OrthoFinder output from all 47 species
Dcu_g48258 HB-1 component *(RINGLET/RLT) of ISWI chromatin remodeling... 0.02 OrthoFinder output from all 47 species
Dde_g00993 No alias component *(RINGLET/RLT) of ISWI chromatin remodeling... 0.01 OrthoFinder output from all 47 species
Ehy_g16445 No alias component *(RINGLET/RLT) of ISWI chromatin remodeling... 0.03 OrthoFinder output from all 47 species
Ehy_g30736 No alias component *(RINGLET/RLT) of ISWI chromatin remodeling... 0.03 OrthoFinder output from all 47 species
GSVIVT01020605001 No alias RNA biosynthesis.transcriptional activation.HB... 0.04 OrthoFinder output from all 47 species
GSVIVT01021113001 HB-1 RNA biosynthesis.transcriptional activation.HB... 0.03 OrthoFinder output from all 47 species
LOC_Os07g42750.1 LOC_Os07g42750 Homeobox-DDT domain protein RLT3 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Lfl_g10310 No alias component *(RINGLET/RLT) of ISWI chromatin remodeling... 0.03 OrthoFinder output from all 47 species
MA_10432531g0010 No alias Homeobox-DDT domain protein RLT3 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
MA_2434g0010 No alias HOX-like transcription factor 0.02 OrthoFinder output from all 47 species
Mp1g04480.1 No alias HOX-like transcription factor 0.02 OrthoFinder output from all 47 species
Msp_g14817 No alias component *(RINGLET/RLT) of ISWI chromatin remodeling... 0.02 OrthoFinder output from all 47 species
Msp_g47810 HB-1 component *(RINGLET/RLT) of ISWI chromatin remodeling... 0.01 OrthoFinder output from all 47 species
Ore_g29882 No alias component *(RINGLET/RLT) of ISWI chromatin remodeling... 0.01 OrthoFinder output from all 47 species
Pir_g65963 No alias component *(RINGLET/RLT) of ISWI chromatin remodeling... 0.01 OrthoFinder output from all 47 species
Ppi_g08783 HB-1 component *(RINGLET/RLT) of ISWI chromatin remodeling... 0.01 OrthoFinder output from all 47 species
Sam_g25993 No alias component *(RINGLET/RLT) of ISWI chromatin remodeling... 0.02 OrthoFinder output from all 47 species
Sam_g29222 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Sam_g50552 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc02g077660.3.1 HB-1, Solyc02g077660 HOX-like transcription factor 0.04 OrthoFinder output from all 47 species
Solyc07g053610.3.1 Solyc07g053610 HOX-like transcription factor 0.02 OrthoFinder output from all 47 species
Tin_g20346 HB-1 component *(RINGLET/RLT) of ISWI chromaTin remodeling... 0.01 OrthoFinder output from all 47 species
Zm00001e020198_P001 HB-1, Zm00001e020198 HOX-like transcription factor 0.04 OrthoFinder output from all 47 species
Zm00001e026524_P003 Zm00001e026524 HOX-like transcription factor 0.02 OrthoFinder output from all 47 species
Zm00001e028032_P001 Zm00001e028032 HOX-like transcription factor 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003714 transcription corepressor activity IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
MF GO:0030246 carbohydrate binding IEP HCCA
MF GO:0030247 polysaccharide binding IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:2001070 starch binding IEP HCCA
InterPro domains Description Start Stop
IPR007759 Asxl_HARE-HTH 826 893
IPR001356 Homeobox_dom 16 70
IPR028941 WHIM2_dom 1261 1333
IPR028942 WHIM1_dom 1075 1114
IPR018501 DDT_dom 658 707
No external refs found!