Cre03.g160953 (PGP1, ABCB1, ATPGP1)

Aliases : PGP1, ABCB1, ATPGP1

No description available

Gene families : OG0001771 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001771_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cre03.g160953

Target	Alias	Description	ECC score	Gene Family Method
AT1G14220	No alias	Ribonuclease T2 family protein	0.02	OrthoFinder output from all 47 species
Aspi01Gene51879.t1	Aspi01Gene51879	T2-type RNase *(RNS) & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g09371	ATRNS1, RNS1	T2-type RNase *(RNS) & original description: none	0.01	OrthoFinder output from all 47 species
GSVIVT01019974001	ATRNS1, RNS1	Extracellular ribonuclease LE OS=Solanum lycopersicum	0.01	OrthoFinder output from all 47 species
Gb_30835	ATRNS1, RNS1	Ribonuclease 1 OS=Arabidopsis thaliana...	0.02	OrthoFinder output from all 47 species
LOC_Os08g33710.1	RNS3, LOC_Os08g33710	Extracellular ribonuclease LE OS=Solanum lycopersicum...	0.01	OrthoFinder output from all 47 species
Len_g04568	ATRNS1, RNS1	T2-type RNase *(RNS) & original description: none	0.02	OrthoFinder output from all 47 species
Len_g45834	ATRNS1, RNS1	T2-type RNase *(RNS) & original description: none	0.01	OrthoFinder output from all 47 species
MA_9482356g0010	No alias	no hits & (original description: none)	0.01	OrthoFinder output from all 47 species
Ore_g03541	ATRNS1, RNS1	T2-type RNase *(RNS) & original description: none	0.02	OrthoFinder output from all 47 species
Smo270532	No alias	Extracellular ribonuclease LE OS=Solanum lycopersicum	0.01	OrthoFinder output from all 47 species
Smo407198	No alias	No description available	0.01	OrthoFinder output from all 47 species
Solyc07g006560.3.1	Solyc07g006560	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004518	nuclease activity	None	Extended
MF	GO:0004519	endonuclease activity	None	Extended
MF	GO:0004521	endoribonuclease activity	None	Extended
MF	GO:0004540	ribonuclease activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0016829	lyase activity	None	Extended
MF	GO:0016849	phosphorus-oxygen lyase activity	None	Extended
MF	GO:0033897	ribonuclease T2 activity	IEA	Interproscan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	HCCA
MF	GO:0005507	copper ion binding	IEP	HCCA
BP	GO:0005975	carbohydrate metabolic process	IEP	HCCA
MF	GO:0008131	primary amine oxidase activity	IEP	HCCA
BP	GO:0009308	amine metabolic process	IEP	HCCA
MF	GO:0016638	oxidoreductase activity, acting on the CH-NH2 group of donors	IEP	HCCA
MF	GO:0016641	oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor	IEP	HCCA
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	HCCA
MF	GO:0030246	carbohydrate binding	IEP	HCCA
MF	GO:0030247	polysaccharide binding	IEP	HCCA
MF	GO:0048038	quinone binding	IEP	HCCA
BP	GO:0055114	obsolete oxidation-reduction process	IEP	HCCA
CC	GO:0110165	cellular anatomical entity	IEP	HCCA
MF	GO:2001070	starch binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR011527	ABC1_TM_dom	1256	1489
IPR001568	RNase_T2-like	57	249

External Links

No external refs found!