1. Home
  2. Species
  3. Chlamydomonas reinhardtii
  4. Sequence
  5. Cre01.g051100

Cre01.g051100 (SKIP)


Aliases : SKIP

Description : RNA processing.RNA splicing.spliceosome-associated non-snRNP MOS4-associated complex (MAC).associated components.SKIP/MAC6 component


Gene families : OG0003767 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003767_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre01.g051100
Cluster HCCA: Cluster_75

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00056p00045910 SKIP,... RNA processing.RNA splicing.spliceosome-associated... 0.02 OrthoFinder output from all 47 species
AT1G77180 SKIP chromatin protein family 0.02 OrthoFinder output from all 47 species
Cba_g12613 SKIP component *(SKIP/MAC6) of MAC spliceosome-associated... 0.02 OrthoFinder output from all 47 species
Ceric.15G032900.1 SKIP, Ceric.15G032900 component *(SKIP/MAC6) of MAC spliceosome-associated... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000944.22 SKIP RNA processing.RNA splicing.spliceosome-associated... 0.03 OrthoFinder output from all 47 species
Dcu_g03841 SKIP component *(SKIP/MAC6) of MAC spliceosome-associated... 0.02 OrthoFinder output from all 47 species
GSVIVT01015321001 SKIP RNA processing.RNA splicing.spliceosome-associated... 0.02 OrthoFinder output from all 47 species
Gb_08010 SKIP component SKIP/MAC6 of non-snRNP MOS4-associated complex 0.01 OrthoFinder output from all 47 species
LOC_Os02g52250.1 SKIP, LOC_Os02g52250 component SKIP/MAC6 of non-snRNP MOS4-associated complex 0.03 OrthoFinder output from all 47 species
MA_70500g0010 SKIP component SKIP/MAC6 of non-snRNP MOS4-associated complex 0.02 OrthoFinder output from all 47 species
Mp5g03870.1 SKIP component SKIP/MAC6 of non-snRNP MOS4-associated complex 0.05 OrthoFinder output from all 47 species
Nbi_g07685 SKIP component *(SKIP/MAC6) of MAC spliceosome-associated... 0.02 OrthoFinder output from all 47 species
Ore_g16005 SKIP component *(SKIP/MAC6) of MAC spliceosome-associated... 0.04 OrthoFinder output from all 47 species
Ore_g16006 SKIP component *(SKIP/MAC6) of MAC spliceosome-associated... 0.01 OrthoFinder output from all 47 species
Ore_g30379 SKIP not classified & original description: none 0.01 OrthoFinder output from all 47 species
Solyc12g008370.3.1 SKIP, Solyc12g008370 component SKIP/MAC6 of non-snRNP MOS4-associated complex 0.02 OrthoFinder output from all 47 species
Tin_g02728 SKIP component *(SKIP/MAC6) of MAC spliceosome-associated... 0.01 OrthoFinder output from all 47 species
Zm00001e023830_P001 SKIP, Zm00001e023830 component SKIP/MAC6 of non-snRNP MOS4-associated complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0000398 mRNA splicing, via spliceosome IEA Interproscan
CC GO:0005681 spliceosomal complex IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
InterPro domains Description Start Stop
IPR004015 SKI-int_prot_SKIP_SNW-dom 170 328
No external refs found!