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  5. Cre01.g022350

Cre01.g022350


Description : DEAD-box ATP-dependent RNA helicase 13 OS=Arabidopsis thaliana


Gene families : OG0005853 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005853_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre01.g022350
Cluster HCCA: Cluster_53

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00095p00139840 evm_27.TU.AmTr_v1... Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase 0.02 OrthoFinder output from all 47 species
AT3G16840 No alias P-loop containing nucleoside triphosphate hydrolases... 0.07 OrthoFinder output from all 47 species
Adi_g110755 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g15352 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g25755 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.13G087700.1 Ceric.13G087700 not classified & original description: pacid=50636878... 0.07 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020943.85 No alias DEAD-box ATP-dependent RNA helicase 13 OS=Oryza sativa... 0.16 OrthoFinder output from all 47 species
Dac_g46202 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dcu_g01929 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g26877 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
GSVIVT01027957001 No alias DEAD-box ATP-dependent RNA helicase 13 OS=Oryza sativa... 0.13 OrthoFinder output from all 47 species
Gb_06963 No alias DEAD-box ATP-dependent RNA helicase 13 OS=Oryza sativa... 0.04 OrthoFinder output from all 47 species
LOC_Os04g43140.1 LOC_Os04g43140 DEAD-box ATP-dependent RNA helicase 13 OS=Oryza sativa... 0.12 OrthoFinder output from all 47 species
Lfl_g17451 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
MA_10436248g0010 No alias DEAD-box ATP-dependent RNA helicase 13 OS=Oryza sativa... 0.04 OrthoFinder output from all 47 species
Mp5g03860.1 No alias DEAD-box ATP-dependent RNA helicase 13 OS=Oryza sativa... 0.11 OrthoFinder output from all 47 species
Ppi_g63313 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0032.g010909 No alias not classified & original description: CDS=107-2290 0.01 OrthoFinder output from all 47 species
Sam_g15235 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc09g090740.4.1 Solyc09g090740 DEAD-box ATP-dependent RNA helicase 13 OS=Oryza sativa... 0.15 OrthoFinder output from all 47 species
Zm00001e007582_P001 Zm00001e007582 DEAD-box ATP-dependent RNA helicase 13 OS=Oryza sativa... 0.14 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
MF GO:0008134 transcription factor binding IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0030490 maturation of SSU-rRNA IEP HCCA
MF GO:0030515 snoRNA binding IEP HCCA
CC GO:0034457 Mpp10 complex IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 497 785
IPR001650 Helicase_C 990 1094
No external refs found!