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  5. GSVIVT01034996001

GSVIVT01034996001 (FIP1[V], ATFIP1[V],...)


Aliases : FIP1[V], ATFIP1[V], FIPS5, ATFIPS5

Description : FIP1[V]-like protein OS=Arabidopsis thaliana


Gene families : OG0001918 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001918_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01034996001
Cluster HCCA: Cluster_75

Target Alias Description ECC score Gene Family Method Actions
Aev_g14836 FIP1[V],... component *(Fip1) of Cleavage and Polyadenylation... 0.02 OrthoFinder output from all 47 species
Aob_g26393 FIP1[V],... component *(Fip1) of Cleavage and Polyadenylation... 0.02 OrthoFinder output from all 47 species
Aob_g32010 FIP1[V],... component *(Fip1) of Cleavage and Polyadenylation... 0.02 OrthoFinder output from all 47 species
Cba_g04743 FIP1[V],... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cre17.g745547 No alias No description available 0.01 OrthoFinder output from all 47 species
Dac_g10619 FIP1[V],... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g16877 FIP1[V],... component *(Fip1) of Cleavage and Polyadenylation... 0.05 OrthoFinder output from all 47 species
Ehy_g18049 FIP1[V],... not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os03g19570.1 FIP1[V],... FIP1[V]-like protein OS=Arabidopsis thaliana... 0.06 OrthoFinder output from all 47 species
LOC_Os03g51520.1 FIP1[V],... component Fip1 of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species
Len_g17376 FIP1[V],... component *(Fip1) of Cleavage and Polyadenylation... 0.04 OrthoFinder output from all 47 species
Len_g58738 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_140047g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Ore_g43037 FIP1[V],... component *(Fip1) of Cleavage and Polyadenylation... 0.04 OrthoFinder output from all 47 species
Pir_g11415 FIP1[V],... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc12g099280.2.1 FIP1[V],... FIP1[V]-like protein OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Spa_g04885 FIP1[V],... component *(Fip1) of Cleavage and Polyadenylation... 0.02 OrthoFinder output from all 47 species
Tin_g02197 FIP1[V],... component *(Fip1) of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species
Tin_g09513 FIP1[V],... not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0002097 tRNA wobble base modification IEP HCCA
BP GO:0002098 tRNA wobble uridine modification IEP HCCA
BP GO:0002100 tRNA wobble adenosine to inosine editing IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004000 adenosine deaminase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006382 adenosine to inosine editing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008251 tRNA-specific adenosine deaminase activity IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016553 base conversion or substitution editing IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP HCCA
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
MF GO:0019239 deaminase activity IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
CC GO:0033588 elongator holoenzyme complex IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR007854 Fip1_dom 215 257
No external refs found!