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  5. GSVIVT01033687001

GSVIVT01033687001


Description : RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).splicing factor 3A complex.SF3A2 component


Gene families : OG0006197 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006197_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01033687001

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00176p00037260 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.U2-type-intron-specific... 0.04 OrthoFinder output from all 47 species
Azfi_s0201.g057583 No alias component *(SF3A2) of splicing factor 3A complex &... 0.05 OrthoFinder output from all 47 species
Ceric.01G049300.1 Ceric.01G049300 component *(SF3A2) of splicing factor 3A complex &... 0.06 OrthoFinder output from all 47 species
LOC_Os03g15700.1 LOC_Os03g15700 component SF3A2 of splicing factor 3A complex 0.04 OrthoFinder output from all 47 species
Ppi_g10727 No alias component *(SF3A2) of splicing factor 3A complex &... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0012.g005554 No alias component *(SF3A2) of splicing factor 3A complex &... 0.03 OrthoFinder output from all 47 species
Solyc09g008470.4.1 Solyc09g008470 component SF3A2 of splicing factor 3A complex 0.07 OrthoFinder output from all 47 species
Spa_g04213 No alias component *(SF3A2) of splicing factor 3A complex &... 0.02 OrthoFinder output from all 47 species
Zm00001e001144_P002 Zm00001e001144 component SF3A2 of splicing factor 3A complex 0.04 OrthoFinder output from all 47 species
Zm00001e038524_P001 Zm00001e038524 component SF3A2 of splicing factor 3A complex 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
MF GO:0008134 transcription factor binding IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
MF GO:0017025 TBP-class protein binding IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
MF GO:0140296 general transcription initiation factor binding IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR031781 SF3A2_dom 110 204
No external refs found!