GSVIVT01033412001 (NCBP)

Aliases : NCBP

Description : Protein biosynthesis.translation initiation.mRNA loading.4EHP RNA-cap-binding factor

Gene families : OG0007108 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007108_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01033412001
Cluster	HCCA: Cluster_101

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00068p00082940	NCBP,...	Protein biosynthesis.translation initiation.mRNA...	0.06	OrthoFinder output from all 47 species
AT5G18110	NCBP	novel cap-binding protein	0.04	OrthoFinder output from all 47 species
Azfi_s0012.g012870	NCBP	RNA-cap-binding factor (4EHP) & original description: CDS=1-612	0.03	OrthoFinder output from all 47 species
Gb_05977	NCBP	RNA-cap-binding factor (4EHP)	0.04	OrthoFinder output from all 47 species
Sam_g06614	No alias	RNA-cap-binding factor (4EHP) & original description: none	0.02	OrthoFinder output from all 47 species
Solyc10g080660.3.1	NCBP, Solyc10g080660	RNA-cap-binding factor (4EHP)	0.04	OrthoFinder output from all 47 species
Spa_g10021	NCBP	RNA-cap-binding factor (4EHP) & original description: none	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003743	translation initiation factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	IEA	Interproscan
BP	GO:0006413	translational initiation	IEA	Interproscan
MF	GO:0008135	translation factor activity, RNA binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
MF	GO:0045182	translation regulator activity	None	Extended
MF	GO:0090079	translation regulator activity, nucleic acid binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	HCCA
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	HCCA
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	HCCA
MF	GO:0003779	actin binding	IEP	HCCA
MF	GO:0004150	dihydroneopterin aldolase activity	IEP	HCCA
CC	GO:0005681	spliceosomal complex	IEP	HCCA
BP	GO:0006397	mRNA processing	IEP	HCCA
BP	GO:0006575	cellular modified amino acid metabolic process	IEP	HCCA
BP	GO:0006760	folic acid-containing compound metabolic process	IEP	HCCA
BP	GO:0008380	RNA splicing	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
MF	GO:0016830	carbon-carbon lyase activity	IEP	HCCA
MF	GO:0016832	aldehyde-lyase activity	IEP	HCCA
MF	GO:0031072	heat shock protein binding	IEP	HCCA
BP	GO:0042558	pteridine-containing compound metabolic process	IEP	HCCA
MF	GO:0051082	unfolded protein binding	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA
CC	GO:1990904	ribonucleoprotein complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001040	TIF_eIF_4E	47	205

External Links

No external refs found!