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  5. GSVIVT01032436001

GSVIVT01032436001


Description : RNA processing.organelle machineries.ribonuclease activities.PNP polynucleotide phosphorylase


Gene families : OG0002534 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002534_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01032436001
Cluster HCCA: Cluster_30

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00113p00140210 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.ribonuclease... 0.06 OrthoFinder output from all 47 species
AT5G14580 No alias polyribonucleotide nucleotidyltransferase, putative 0.17 OrthoFinder output from all 47 species
Adi_g010370 No alias EC_2.7 transferase transferring phosphorus-containing... 0.03 OrthoFinder output from all 47 species
Aev_g04157 No alias EC_2.7 transferase transferring phosphorus-containing... 0.03 OrthoFinder output from all 47 species
Als_g03851 No alias EC_2.7 transferase transferring phosphorus-containing... 0.07 OrthoFinder output from all 47 species
Aop_g29988 No alias EC_2.7 transferase transferring phosphorus-containing... 0.02 OrthoFinder output from all 47 species
Azfi_s0030.g024359 No alias EC_2.7 transferase transferring phosphorus-containing... 0.04 OrthoFinder output from all 47 species
Cba_g07917 RIF10, PNP EC_2.7 transferase transferring phosphorus-containing... 0.02 OrthoFinder output from all 47 species
Cba_g17083 No alias EC_2.7 transferase transferring phosphorus-containing... 0.05 OrthoFinder output from all 47 species
Ceric.25G023900.1 Ceric.25G023900 EC_2.7 transferase transferring phosphorus-containing... 0.08 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020603.85 No alias RNA processing.organelle machineries.ribonuclease... 0.02 OrthoFinder output from all 47 species
Dac_g14765 No alias EC_2.7 transferase transferring phosphorus-containing... 0.07 OrthoFinder output from all 47 species
Dcu_g06445 No alias EC_2.7 transferase transferring phosphorus-containing... 0.03 OrthoFinder output from all 47 species
Ehy_g04014 No alias EC_2.7 transferase transferring phosphorus-containing... 0.03 OrthoFinder output from all 47 species
Gb_20425 No alias polynucleotide phosphorylase (PNP) 0.08 OrthoFinder output from all 47 species
LOC_Os02g40460.1 LOC_Os02g40460 polynucleotide phosphorylase (PNP) 0.02 OrthoFinder output from all 47 species
Len_g23960 RIF10, PNP EC_2.7 transferase transferring phosphorus-containing... 0.03 OrthoFinder output from all 47 species
MA_10432723g0020 No alias polynucleotide phosphorylase (PNP) 0.05 OrthoFinder output from all 47 species
MA_10434926g0010 No alias Polyribonucleotide nucleotidyltransferase 2,... 0.06 OrthoFinder output from all 47 species
Mp7g12350.1 No alias polynucleotide phosphorylase (PNP) 0.09 OrthoFinder output from all 47 species
Msp_g14489 No alias EC_2.7 transferase transferring phosphorus-containing... 0.04 OrthoFinder output from all 47 species
Ore_g20554 RIF10, PNP EC_2.7 transferase transferring phosphorus-containing... 0.02 OrthoFinder output from all 47 species
Sam_g09102 No alias EC_2.7 transferase transferring phosphorus-containing... 0.04 OrthoFinder output from all 47 species
Smo84724 No alias RNA processing.organelle machineries.ribonuclease... 0.07 OrthoFinder output from all 47 species
Solyc02g086600.3.1 Solyc02g086600 polynucleotide phosphorylase (PNP) 0.18 OrthoFinder output from all 47 species
Tin_g20770 No alias EC_2.7 transferase transferring phosphorus-containing... 0.04 OrthoFinder output from all 47 species
Zm00001e015113_P001 Zm00001e015113 polynucleotide phosphorylase (PNP) 0.14 OrthoFinder output from all 47 species
Zm00001e032889_P001 RIF10, PNP,... polynucleotide phosphorylase (PNP) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
BP GO:0006396 RNA processing IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005759 mitochondrial matrix IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
CC GO:0031974 membrane-enclosed lumen IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
CC GO:0043233 organelle lumen IEP HCCA
CC GO:0070013 intracellular organelle lumen IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR003029 S1_domain 629 700
IPR001247 ExoRNase_PH_dom1 15 145
IPR001247 ExoRNase_PH_dom1 326 459
IPR015848 PNPase_PH_RNA-bd_bac/org-type 245 323
IPR015847 ExoRNase_PH_dom2 148 210
No external refs found!