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  5. GSVIVT01031459001

GSVIVT01031459001


Description : RNA biosynthesis.transcriptional activation.C2H2 zinc finger transcription factor


Gene families : OG0002003 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002003_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01031459001
Cluster HCCA: Cluster_102

Target Alias Description ECC score Gene Family Method Actions
AT1G34370 STOP1 C2H2 and C2HC zinc fingers superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G22890 No alias C2H2 and C2HC zinc fingers superfamily protein 0.09 OrthoFinder output from all 47 species
Aev_g08694 STOP1 C2H2-type subclass STOP transcription factor & original... 0.02 OrthoFinder output from all 47 species
Ceric.06G007600.1 STOP1, Ceric.06G007600 C2H2-type subclass STOP transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ceric.06G007700.1 STOP1, Ceric.06G007700 C2H2-type subclass STOP transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ceric.06G011000.1 STOP1, Ceric.06G011000 C2H2-type subclass STOP transcription factor & original... 0.05 OrthoFinder output from all 47 species
Dde_g08098 STOP1 C2H2-type subclass STOP transcription factor & original... 0.02 OrthoFinder output from all 47 species
GSVIVT01034505001 STOP1 RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.05 OrthoFinder output from all 47 species
Gb_21302 No alias C2H2 zinc finger transcription factor 0.02 OrthoFinder output from all 47 species
LOC_Os03g62230.1 STOP1, LOC_Os03g62230 C2H2 zinc finger transcription factor 0.06 OrthoFinder output from all 47 species
LOC_Os04g08290.1 LOC_Os04g08290 C2H2 zinc finger transcription factor 0.04 OrthoFinder output from all 47 species
LOC_Os08g44830.1 LOC_Os08g44830 C2H2 zinc finger transcription factor 0.09 OrthoFinder output from all 47 species
LOC_Os12g07280.1 STOP1, LOC_Os12g07280 C2H2 zinc finger transcription factor 0.03 OrthoFinder output from all 47 species
Ppi_g11084 STOP1 C2H2-type subclass STOP transcription factor & original... 0.04 OrthoFinder output from all 47 species
Smo58350 STOP1 RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.05 OrthoFinder output from all 47 species
Smo58353 STOP1 RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.03 OrthoFinder output from all 47 species
Spa_g12910 STOP1 C2H2-type subclass STOP transcription factor & original... 0.05 OrthoFinder output from all 47 species
Zm00001e028659_P001 STOP1, Zm00001e028659 C2H2 zinc finger transcription factor 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0004497 monooxygenase activity IEP HCCA
MF GO:0004499 N,N-dimethylaniline monooxygenase activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006952 defense response IEP HCCA
MF GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
MF GO:0050661 NADP binding IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
MF GO:0071949 FAD binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA

No InterPro domains available for this sequence

No external refs found!