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  5. GSVIVT01030051001

GSVIVT01030051001


Description : Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).outer ring.NUP133 scaffold nucleoporin


Gene families : OG0005400 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005400_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01030051001
Cluster HCCA: Cluster_75

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00088p00153240 evm_27.TU.AmTr_v1... Protein translocation.nucleus.nucleocytoplasmic... 0.07 OrthoFinder output from all 47 species
AT2G05120 No alias Nucleoporin, Nup133/Nup155-like 0.16 OrthoFinder output from all 47 species
Adi_g007776 No alias scaffold nucleoporin of nuclear pore complex *(NUP133) &... 0.02 OrthoFinder output from all 47 species
Ala_g02689 No alias scaffold nucleoporin of nuclear pore complex *(NUP133) &... 0.03 OrthoFinder output from all 47 species
Aop_g07570 No alias scaffold nucleoporin of nuclear pore complex *(NUP133) &... 0.04 OrthoFinder output from all 47 species
Dac_g31164 No alias scaffold nucleoporin of nuclear pore complex *(NUP133) &... 0.04 OrthoFinder output from all 47 species
Dcu_g14943 No alias scaffold nucleoporin of nuclear pore complex *(NUP133) &... 0.04 OrthoFinder output from all 47 species
Ehy_g06208 No alias scaffold nucleoporin of nuclear pore complex *(NUP133) &... 0.03 OrthoFinder output from all 47 species
Gb_30615 No alias NUP133 scaffold nucleoporin of nuclear pore complex 0.08 OrthoFinder output from all 47 species
LOC_Os03g12450.1 LOC_Os03g12450 NUP133 scaffold nucleoporin of nuclear pore complex 0.12 OrthoFinder output from all 47 species
Len_g19178 No alias scaffold nucleoporin of nuclear pore complex *(NUP133) &... 0.04 OrthoFinder output from all 47 species
Lfl_g25138 No alias scaffold nucleoporin of nuclear pore complex *(NUP133) &... 0.03 OrthoFinder output from all 47 species
Mp1g23960.1 No alias NUP133 scaffold nucleoporin of nuclear pore complex 0.04 OrthoFinder output from all 47 species
Ore_g26746 No alias scaffold nucleoporin of nuclear pore complex *(NUP133) &... 0.07 OrthoFinder output from all 47 species
Ppi_g02412 No alias scaffold nucleoporin of nuclear pore complex *(NUP133) &... 0.03 OrthoFinder output from all 47 species
Smo439467 No alias Protein translocation.nucleus.nucleocytoplasmic... 0.03 OrthoFinder output from all 47 species
Solyc07g047860.4.1 Solyc07g047860 NUP133 scaffold nucleoporin of nuclear pore complex 0.14 OrthoFinder output from all 47 species
Zm00001e038670_P001 Zm00001e038670 NUP133 scaffold nucleoporin of nuclear pore complex 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
BP GO:0002097 tRNA wobble base modification IEP HCCA
BP GO:0002098 tRNA wobble uridine modification IEP HCCA
BP GO:0002100 tRNA wobble adenosine to inosine editing IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0004000 adenosine deaminase activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005096 GTPase activator activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006382 adenosine to inosine editing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008047 enzyme activator activity IEP HCCA
MF GO:0008251 tRNA-specific adenosine deaminase activity IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016553 base conversion or substitution editing IEP HCCA
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP HCCA
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP HCCA
MF GO:0019239 deaminase activity IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
CC GO:0033588 elongator holoenzyme complex IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR014908 Nucleoporin_Nup133/Nup155_N 83 212
IPR014908 Nucleoporin_Nup133/Nup155_N 257 470
IPR007187 Nucleoporin_Nup133/Nup155_C 946 1080
No external refs found!