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  5. GSVIVT01028110001

GSVIVT01028110001


Description : Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.RING-domain E3 ligase activities.RING-v-type E3 ligase


Gene families : OG0000370 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000370_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01028110001

Target Alias Description ECC score Gene Family Method Actions
AT5G38070 No alias RING/FYVE/PHD zinc finger superfamily protein 0.04 OrthoFinder output from all 47 species
Adi_g074839 No alias E3 ubiquitin ligase & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g115238 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Als_g01768 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Als_g40952 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g46783 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g43317 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g68684 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.23G021200.1 Ceric.23G021200 E3 ubiquitin ligase & original description:... 0.02 OrthoFinder output from all 47 species
Dac_g09799 No alias E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g06352 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g16641 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g17220 No alias E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g20355 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01011789001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
Gb_37740 No alias RING-v-class E3 ligase 0.07 OrthoFinder output from all 47 species
LOC_Os11g38800.1 LOC_Os11g38800 RING-v-class E3 ligase 0.04 OrthoFinder output from all 47 species
Msp_g21354 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g09753 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g16331 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g12300 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g40789 No alias E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0002.g000908 No alias E3 ubiquitin ligase & original description: CDS=1-1032 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0095.g019260 No alias E3 ubiquitin ligase & original description: CDS=708-1604 0.02 OrthoFinder output from all 47 species
Sam_g50720 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Smo420592 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
Solyc01g079530.4.1 Solyc01g079530 RING-v-class E3 ligase 0.09 OrthoFinder output from all 47 species
Solyc03g116030.4.1 Solyc03g116030 RING-v-class E3 ligase 0.03 OrthoFinder output from all 47 species
Solyc04g007600.4.1 Solyc04g007600 RING-v-class E3 ligase 0.03 OrthoFinder output from all 47 species
Solyc08g014080.4.1 Solyc08g014080 RING-v-class E3 ligase 0.03 OrthoFinder output from all 47 species
Spa_g30245 No alias E3 ubiquitin ligase & original description: none 0.09 OrthoFinder output from all 47 species
Spa_g40447 No alias E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g37701 No alias E3 ubiquiTin ligase & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e021220_P001 Zm00001e021220 RING-v-class E3 ligase 0.06 OrthoFinder output from all 47 species
Zm00001e025697_P001 Zm00001e025697 RING-v-class E3 ligase 0.04 OrthoFinder output from all 47 species
Zm00001e026209_P003 Zm00001e026209 RING-v-class E3 ligase 0.04 OrthoFinder output from all 47 species
Zm00001e028572_P001 Zm00001e028572 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e031477_P002 Zm00001e031477 RING-v-class E3 ligase 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR022143 DUF3675 73 184
IPR011016 Znf_RING-CH 20 67
No external refs found!