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  5. GSVIVT01025723001

GSVIVT01025723001


Description : Cell division control protein 48 homolog D OS=Arabidopsis thaliana


Gene families : OG0000324 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000324_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01025723001

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00072p00117380 evm_27.TU.AmTr_v1... Cell division control protein 48 homolog D... 0.03 OrthoFinder output from all 47 species
AMTR_s00085p00052820 CDC48A, CDC48,... Cell division cycle protein 48 homolog OS=Glycine max 0.03 OrthoFinder output from all 47 species
Adi_g080378 CDC48A, CDC48, ATCDC48 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g09138 CIP111 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g20264 No alias platform ATPase CDC48 & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g33182 emb1354, CDC48C platform ATPase CDC48 & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0210.g058064 No alias platform ATPase CDC48 & original description: CDS=1-2484 0.03 OrthoFinder output from all 47 species
Cba_g67891 CDC48A, CDC48, ATCDC48 platform ATPase CDC48 & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.02G031700.1 Ceric.02G031700 platform ATPase CDC48 & original description:... 0.03 OrthoFinder output from all 47 species
Cre06.g269950 No alias Cell division control protein 48 homolog E... 0.02 OrthoFinder output from all 47 species
Dcu_g08248 No alias platform ATPase CDC48 & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g10601 emb1354, CDC48C platform ATPase CDC48 & original description: none 0.03 OrthoFinder output from all 47 species
Gb_24470 No alias platform ATPase (CDC48) 0.03 OrthoFinder output from all 47 species
LOC_Os10g30580.1 LOC_Os10g30580 platform ATPase (CDC48) 0.03 OrthoFinder output from all 47 species
Lfl_g39791 No alias platform ATPase CDC48 & original description: none 0.03 OrthoFinder output from all 47 species
MA_10168585g0010 No alias platform ATPase (CDC48) 0.04 OrthoFinder output from all 47 species
MA_10429450g0010 No alias Cell division control protein 48 homolog D... 0.06 OrthoFinder output from all 47 species
Ore_g40907 CDC48B platform ATPase CDC48 & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g16719 No alias platform ATPase CDC48 & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g18794 No alias platform ATPase CDC48 & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g55150 No alias platform ATPase CDC48 & original description: none 0.03 OrthoFinder output from all 47 species
Solyc10g084050.2.1 Solyc10g084050 platform ATPase (CDC48) 0.04 OrthoFinder output from all 47 species
Spa_g41958 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g53868 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g55989 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g15152 emb1354, CDC48C platform ATPase CDC48 & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e000416_P002 Zm00001e000416 platform ATPase (CDC48) 0.02 OrthoFinder output from all 47 species
Zm00001e012761_P001 Zm00001e012761 platform ATPase (CDC48) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005672 transcription factor TFIIA complex IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006367 transcription initiation at RNA polymerase II promoter IEP HCCA
BP GO:0006605 protein targeting IEP HCCA
BP GO:0006606 protein import into nucleus IEP HCCA
BP GO:0006612 protein targeting to membrane IEP HCCA
BP GO:0006613 cotranslational protein targeting to membrane IEP HCCA
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008312 7S RNA binding IEP HCCA
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP HCCA
BP GO:0015031 protein transport IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030126 COPI vesicle coat IEP HCCA
MF GO:0031072 heat shock protein binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0034504 protein localization to nucleus IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0045047 protein targeting to ER IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
CC GO:0048500 signal recognition particle IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051170 import into nucleus IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0051668 localization within membrane IEP HCCA
MF GO:0061608 nuclear import signal receptor activity IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0070972 protein localization to endoplasmic reticulum IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP HCCA
BP GO:0072657 protein localization to membrane IEP HCCA
BP GO:0090150 establishment of protein localization to membrane IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
MF GO:0140104 molecular carrier activity IEP HCCA
MF GO:0140142 nucleocytoplasmic carrier activity IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR003959 ATPase_AAA_core 518 651
IPR003959 ATPase_AAA_core 245 374
IPR004201 Cdc48_dom2 132 195
IPR003338 CDC4_N-term_subdom 30 111
No external refs found!