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  5. GSVIVT01025336001

GSVIVT01025336001 (TOP6B, BIN3, HYP6,...)


Aliases : TOP6B, BIN3, HYP6, RHL3, ATTOP6B

Description : DNA topoisomerase 6 subunit B OS=Arabidopsis thaliana


Gene families : OG0006857 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006857_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01025336001

Target Alias Description ECC score Gene Family Method Actions
Aop_g13905 TOP6B, BIN3,... component *(TOP6B) of somatic DNA topoisomerase VI... 0.03 OrthoFinder output from all 47 species
Ceric.05G029900.1 TOP6B, BIN3,... component *(TOP6B) of somatic DNA topoisomerase VI... 0.03 OrthoFinder output from all 47 species
LOC_Os09g10770.1 TOP6B, BIN3,... DNA topoisomerase 6 subunit B OS=Oryza sativa subsp.... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0168.g024276 TOP6B, BIN3,... component *(TOP6B) of somatic DNA topoisomerase VI... 0.03 OrthoFinder output from all 47 species
Zm00001e033688_P003 TOP6B, BIN3,... DNA topoisomerase 6 subunit B OS=Oryza sativa subsp.... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEA Interproscan
BP GO:0006265 DNA topological change IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000723 telomere maintenance IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
MF GO:0008483 transaminase activity IEP HCCA
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP HCCA
BP GO:0032200 telomere organization IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
InterPro domains Description Start Stop
IPR003594 HATPase_C 52 231
IPR015320 TopoVI_B_transducer 402 560
No external refs found!