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No description available
Gene families : OG0004787 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004787_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: GSVIVT01022255001 | |
| Cluster | HCCA: Cluster_95 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00078p00166420 | evm_27.TU.AmTr_v1... | Protein degradation.peptidase families.metallopeptidase... | 0.05 | OrthoFinder output from all 47 species | |
| AT4G39420 | No alias | unknown protein; Has 46 Blast hits to 40 proteins in 10... | 0.16 | OrthoFinder output from all 47 species | |
| Adi_g055851 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Aev_g14940 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Ala_g07642 | No alias | not classified & original description: none | 0.14 | OrthoFinder output from all 47 species | |
| Als_g14010 | No alias | not classified & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Aob_g29246 | No alias | not classified & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Aspi01Gene69937.t1 | Aspi01Gene69937 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0032.g024813 | No alias | not classified & original description: CDS=1-9261 | 0.08 | OrthoFinder output from all 47 species | |
| Cba_g15371 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.03G068400.1 | Ceric.03G068400 | not classified & original description: pacid=50571766... | 0.06 | OrthoFinder output from all 47 species | |
| Dac_g31801 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Dcu_g20414 | No alias | not classified & original description: none | 0.09 | OrthoFinder output from all 47 species | |
| Ehy_g25392 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os01g08750.2 | LOC_Os01g08750 | no hits & (original description: none) | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g02480 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| MA_10429811g0020 | No alias | no hits & (original description: none) | 0.01 | OrthoFinder output from all 47 species | |
| MA_280504g0010 | No alias | no hits & (original description: none) | 0.05 | OrthoFinder output from all 47 species | |
| MA_646g0010 | No alias | no hits & (original description: none) | 0.1 | OrthoFinder output from all 47 species | |
| MA_693456g0010 | No alias | no hits & (original description: none) | 0.07 | OrthoFinder output from all 47 species | |
| Mp4g01220.1 | No alias | no hits & (original description: none) | 0.05 | OrthoFinder output from all 47 species | |
| Msp_g18775 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g29875 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pir_g19111 | No alias | not classified & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0040.g012311 | No alias | not classified & original description: CDS=1-8169 | 0.04 | OrthoFinder output from all 47 species | |
| Sam_g50521 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Solyc04g051570.4.1 | Solyc04g051570 | no hits & (original description: none) | 0.08 | OrthoFinder output from all 47 species | |
| Spa_g17783 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e006162_P003 | Zm00001e006162 | no hits & (original description: none) | 0.08 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000184 | nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | IEP | HCCA |
| BP | GO:0000956 | nuclear-transcribed mRNA catabolic process | IEP | HCCA |
| MF | GO:0004386 | helicase activity | IEP | HCCA |
| MF | GO:0004842 | ubiquitin-protein transferase activity | IEP | HCCA |
| MF | GO:0005543 | phospholipid binding | IEP | HCCA |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0006351 | DNA-templated transcription | IEP | HCCA |
| BP | GO:0006355 | regulation of DNA-templated transcription | IEP | HCCA |
| BP | GO:0006401 | RNA catabolic process | IEP | HCCA |
| BP | GO:0006402 | mRNA catabolic process | IEP | HCCA |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
| MF | GO:0008270 | zinc ion binding | IEP | HCCA |
| BP | GO:0009889 | regulation of biosynthetic process | IEP | HCCA |
| BP | GO:0009892 | negative regulation of metabolic process | IEP | HCCA |
| BP | GO:0010468 | regulation of gene expression | IEP | HCCA |
| BP | GO:0010556 | regulation of macromolecule biosynthetic process | IEP | HCCA |
| BP | GO:0010605 | negative regulation of macromolecule metabolic process | IEP | HCCA |
| BP | GO:0010629 | negative regulation of gene expression | IEP | HCCA |
| BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
| BP | GO:0016071 | mRNA metabolic process | IEP | HCCA |
| BP | GO:0016567 | protein ubiquitination | IEP | HCCA |
| BP | GO:0018130 | heterocycle biosynthetic process | IEP | HCCA |
| BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0019222 | regulation of metabolic process | IEP | HCCA |
| BP | GO:0019438 | aromatic compound biosynthetic process | IEP | HCCA |
| BP | GO:0019439 | aromatic compound catabolic process | IEP | HCCA |
| MF | GO:0019787 | ubiquitin-like protein transferase activity | IEP | HCCA |
| BP | GO:0031323 | regulation of cellular metabolic process | IEP | HCCA |
| BP | GO:0031326 | regulation of cellular biosynthetic process | IEP | HCCA |
| BP | GO:0032446 | protein modification by small protein conjugation | IEP | HCCA |
| BP | GO:0032774 | RNA biosynthetic process | IEP | HCCA |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0034654 | nucleobase-containing compound biosynthetic process | IEP | HCCA |
| BP | GO:0034655 | nucleobase-containing compound catabolic process | IEP | HCCA |
| MF | GO:0035091 | phosphatidylinositol binding | IEP | HCCA |
| MF | GO:0043169 | cation binding | IEP | HCCA |
| BP | GO:0044270 | cellular nitrogen compound catabolic process | IEP | HCCA |
| BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
| BP | GO:0046700 | heterocycle catabolic process | IEP | HCCA |
| MF | GO:0046872 | metal ion binding | IEP | HCCA |
| MF | GO:0046914 | transition metal ion binding | IEP | HCCA |
| BP | GO:0048519 | negative regulation of biological process | IEP | HCCA |
| BP | GO:0050789 | regulation of biological process | IEP | HCCA |
| BP | GO:0050794 | regulation of cellular process | IEP | HCCA |
| BP | GO:0051171 | regulation of nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0051252 | regulation of RNA metabolic process | IEP | HCCA |
| BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | HCCA |
| BP | GO:0065007 | biological regulation | IEP | HCCA |
| BP | GO:0080090 | regulation of primary metabolic process | IEP | HCCA |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
| BP | GO:0097659 | nucleic acid-templated transcription | IEP | HCCA |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
| BP | GO:1901361 | organic cyclic compound catabolic process | IEP | HCCA |
| BP | GO:1901362 | organic cyclic compound biosynthetic process | IEP | HCCA |
| BP | GO:1903506 | regulation of nucleic acid-templated transcription | IEP | HCCA |
| BP | GO:2001141 | regulation of RNA biosynthetic process | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR028107 | Spatacsin_C_dom | 1207 | 1497 |
| No external refs found! |