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  5. GSVIVT01019366001

GSVIVT01019366001


No description available


Gene families : OG0002966 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002966_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01019366001
Cluster HCCA: Cluster_75

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00084p00036460 evm_27.TU.AmTr_v1... No description available 0.08 OrthoFinder output from all 47 species
AT5G24740 No alias Protein of unknown function (DUF1162) 0.13 OrthoFinder output from all 47 species
Adi_g011972 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g14267 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g05069 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Aop_g09082 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0359.g066851 No alias not classified & original description: CDS=121-8928 0.04 OrthoFinder output from all 47 species
Cba_g15131 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.03G037800.1 Ceric.03G037800 not classified & original description: pacid=50571745... 0.12 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000042.91 No alias No description available 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000042.92 No alias No description available 0.01 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000459.51 No alias No description available 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000459.52 No alias No description available 0.01 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000615.50 No alias No description available 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020710.86 No alias No description available 0.01 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021440.8 No alias No description available 0.01 OrthoFinder output from all 47 species
Dcu_g05849 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g09937 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Gb_28330 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
LOC_Os08g02350.1 LOC_Os08g02350 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
LOC_Os08g02354.1 LOC_Os08g02354 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_10435329g0010 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
MA_12699g0020 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_174037g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Mp7g13250.1 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Pir_g05470 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0146.g023047 No alias not classified & original description: CDS=181-6594 0.03 OrthoFinder output from all 47 species
Sam_g17461 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Smo439148 No alias No description available 0.07 OrthoFinder output from all 47 species
Solyc11g045140.1.1 Solyc11g045140 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Spa_g22653 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e029198_P001 Zm00001e029198 no hits & (original description: none) 0.09 OrthoFinder output from all 47 species
Zm00001e029204_P001 Zm00001e029204 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP HCCA
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP HCCA
MF GO:0003909 DNA ligase activity IEP HCCA
MF GO:0003910 DNA ligase (ATP) activity IEP HCCA
MF GO:0004197 cysteine-type endopeptidase activity IEP HCCA
MF GO:0004198 calcium-dependent cysteine-type endopeptidase activity IEP HCCA
MF GO:0004674 protein serine/threonine kinase activity IEP HCCA
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP HCCA
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0009966 regulation of signal transduction IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0010646 regulation of cell communication IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
BP GO:0023051 regulation of signaling IEP HCCA
BP GO:0032012 regulation of ARF protein signal transduction IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046578 regulation of Ras protein signal transduction IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0048583 regulation of response to stimulus IEP HCCA
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP HCCA
CC GO:0098797 plasma membrane protein complex IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
BP GO:1902531 regulation of intracellular signal transduction IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR009543 VPS13_VAB 1733 2017
IPR031645 VPS13_DH-like 2348 2516
IPR031642 VPS13_mid_RBG 246 471
No external refs found!