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  5. GSVIVT01017972001

GSVIVT01017972001


Description : RNA biosynthesis.transcriptional activation.PHD finger transcription factor


Gene families : OG0000402 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000402_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01017972001
Cluster HCCA: Cluster_75

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00050160 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.PHD finger... 0.04 OrthoFinder output from all 47 species
AMTR_s00039p00203500 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.PHD finger... 0.02 OrthoFinder output from all 47 species
AMTR_s00146p00080830 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.PHD finger... 0.06 OrthoFinder output from all 47 species
Adi_g020053 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g057776 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g08216 No alias component *(IDM1) of ROS1-recruitment complex & original... 0.05 OrthoFinder output from all 47 species
Aev_g13062 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g16047 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g20182 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species
Ala_g20272 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g23026 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g32072 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g29724 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g13559 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene19628.t1 Aspi01Gene19628 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene25981.t1 Aspi01Gene25981 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene53152.t1 Aspi01Gene53152 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene53154.t1 Aspi01Gene53154 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0006.g010269 No alias not classified & original description: CDS=1215-6422 0.01 OrthoFinder output from all 47 species
Azfi_s0519.g075228 No alias not classified & original description: CDS=211-3699 0.04 OrthoFinder output from all 47 species
Cba_g16245 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g31776 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.04G075300.1 Ceric.04G075300 not classified & original description: pacid=50631416... 0.15 OrthoFinder output from all 47 species
Ceric.19G070400.1 Ceric.19G070400 not classified & original description: pacid=50576012... 0.1 OrthoFinder output from all 47 species
Ceric.35G031200.1 Ceric.35G031200 not classified & original description: pacid=50581090... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000441.22 No alias No description available 0.01 OrthoFinder output from all 47 species
Cre06.g296950 No alias RNA biosynthesis.transcriptional activation.PHD finger... 0.01 OrthoFinder output from all 47 species
Cre08.g386000 No alias No description available 0.02 OrthoFinder output from all 47 species
Dcu_g09002 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species
Dcu_g16965 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Dcu_g50149 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g01772 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g19220 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g07958 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g10038 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_06644 No alias component IDM1 of ROS1-recruitment complex. PHD finger... 0.05 OrthoFinder output from all 47 species
Gb_10088 No alias component IDM1 of ROS1-recruitment complex. PHD finger... 0.02 OrthoFinder output from all 47 species
Gb_10246 No alias PHD finger transcription factor 0.03 OrthoFinder output from all 47 species
Gb_41247 No alias component IDM1 of ROS1-recruitment complex. PHD finger... 0.04 OrthoFinder output from all 47 species
LOC_Os04g59510.1 LOC_Os04g59510 PHD finger transcription factor 0.04 OrthoFinder output from all 47 species
Len_g12071 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g47387 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g02467 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g06765 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
MA_139275g0010 No alias PHD finger transcription factor 0.09 OrthoFinder output from all 47 species
MA_14500g0010 No alias component IDM1 of ROS1-recruitment complex. PHD finger... 0.11 OrthoFinder output from all 47 species
MA_3931g0010 No alias PHD finger transcription factor 0.03 OrthoFinder output from all 47 species
Mp6g20670.1 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp6g21090.2 No alias PHD finger transcription factor 0.04 OrthoFinder output from all 47 species
Msp_g13348 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Msp_g13351 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g29122 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g13686 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g18818 No alias component *(IDM1) of ROS1-recruitment complex & original... 0.06 OrthoFinder output from all 47 species
Pir_g01695 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g06867 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g18645 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g35938 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g16829 No alias component *(IDM1) of ROS1-recruitment complex & original... 0.02 OrthoFinder output from all 47 species
Ppi_g01427 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g08147 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g08484 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0009.g004313 No alias not classified & original description: CDS=588-5219 0.07 OrthoFinder output from all 47 species
Sacu_v1.1_s0245.g026694 No alias not classified & original description: CDS=519-4760 0.04 OrthoFinder output from all 47 species
Sam_g15944 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g16192 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc03g005170.3.1 Solyc03g005170 PHD finger transcription factor 0.03 OrthoFinder output from all 47 species
Solyc09g076010.3.1 Solyc09g076010 PHD finger transcription factor 0.05 OrthoFinder output from all 47 species
Spa_g04858 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g21891 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g50990 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Tin_g20194 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g21039 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Tin_g27963 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e005667_P001 Zm00001e005667 PHD finger transcription factor 0.11 OrthoFinder output from all 47 species
Zm00001e012046_P003 Zm00001e012046 PHD finger transcription factor 0.03 OrthoFinder output from all 47 species
Zm00001e032904_P002 Zm00001e032904 PHD finger transcription factor 0.06 OrthoFinder output from all 47 species
Zm00001e042012_P001 Zm00001e042012 component IDM1 of ROS1-recruitment complex. PHD finger... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0004197 cysteine-type endopeptidase activity IEP HCCA
MF GO:0004198 calcium-dependent cysteine-type endopeptidase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006606 protein import into nucleus IEP HCCA
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007186 G protein-coupled receptor signaling pathway IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0031683 G-protein beta/gamma-subunit complex binding IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0034504 protein localization to nucleus IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051170 import into nucleus IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR032308 TDBD 389 461
IPR019787 Znf_PHD-finger 502 544
No external refs found!