GSVIVT01017856001 (SAMDC4, BUD2)

Aliases : SAMDC4, BUD2

Description : Polyamine metabolism.spermidine/spermine.synthesis.S-adenosyl methionine decarboxylase

Gene families : OG0000356 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000356_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01017856001

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00025p00139140	SAMDC4, BUD2,...	Polyamine...	0.06	OrthoFinder output from all 47 species
Aspi01Gene54070.t1	Aspi01Gene54070	EC_4.1 carbon-carbon lyase & original description: none	0.03	OrthoFinder output from all 47 species
Dac_g11559	No alias	EC_4.1 carbon-carbon lyase & original description: none	0.04	OrthoFinder output from all 47 species
Dde_g01538	No alias	EC_4.1 carbon-carbon lyase & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01015447001	No alias	Polyamine metabolism.putrescine.synthesis.cytosolic...	0.04	OrthoFinder output from all 47 species
Gb_35976	No alias	S-adenosyl methionine decarboxylase	0.03	OrthoFinder output from all 47 species
Len_g20881	No alias	EC_4.1 carbon-carbon lyase & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g18523	No alias	EC_4.1 carbon-carbon lyase & original description: none	0.02	OrthoFinder output from all 47 species
Pnu_g22755	SAMDC	EC_4.1 carbon-carbon lyase & original description: none	0.02	OrthoFinder output from all 47 species
Solyc01g080380.4.1	SAMDC4, BUD2,...	S-adenosyl methionine decarboxylase	0.05	OrthoFinder output from all 47 species
Solyc03g098310.1.1	Solyc03g098310	ornithine decarboxylase	0.03	OrthoFinder output from all 47 species
Spa_g11563	No alias	EC_4.1 carbon-carbon lyase & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g13328	No alias	EC_4.1 carbon-carbon lyase & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e034199_P001	SAMDC, Zm00001e034199	S-adenosyl methionine decarboxylase	0.03	OrthoFinder output from all 47 species
Zm00001e034834_P001	Zm00001e034834	ornithine decarboxylase	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004014	adenosylmethionine decarboxylase activity	IEA	Interproscan
BP	GO:0006576	biogenic amine metabolic process	None	Extended
BP	GO:0006595	polyamine metabolic process	None	Extended
BP	GO:0006596	polyamine biosynthetic process	None	Extended
BP	GO:0006597	spermine biosynthetic process	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008215	spermine metabolic process	None	Extended
BP	GO:0008216	spermidine metabolic process	None	Extended
BP	GO:0008295	spermidine biosynthetic process	IEA	Interproscan
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009308	amine metabolic process	None	Extended
BP	GO:0009309	amine biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016829	lyase activity	None	Extended
MF	GO:0016830	carbon-carbon lyase activity	None	Extended
MF	GO:0016831	carboxy-lyase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0042401	biogenic amine biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	IEP	HCCA
MF	GO:0004180	carboxypeptidase activity	IEP	HCCA
MF	GO:0004185	serine-type carboxypeptidase activity	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
CC	GO:0005634	nucleus	IEP	HCCA
BP	GO:0006325	chromatin organization	IEP	HCCA
BP	GO:0006334	nucleosome assembly	IEP	HCCA
BP	GO:0006338	chromatin remodeling	IEP	HCCA
MF	GO:0008134	transcription factor binding	IEP	HCCA
MF	GO:0008238	exopeptidase activity	IEP	HCCA
MF	GO:0017025	TBP-class protein binding	IEP	HCCA
BP	GO:0022607	cellular component assembly	IEP	HCCA
CC	GO:0032993	protein-DNA complex	IEP	HCCA
BP	GO:0034728	nucleosome organization	IEP	HCCA
CC	GO:0043226	organelle	IEP	HCCA
CC	GO:0043227	membrane-bounded organelle	IEP	HCCA
CC	GO:0043229	intracellular organelle	IEP	HCCA
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	HCCA
BP	GO:0043933	protein-containing complex organization	IEP	HCCA
CC	GO:0044815	DNA packaging complex	IEP	HCCA
MF	GO:0046983	protein dimerization activity	IEP	HCCA
BP	GO:0065003	protein-containing complex assembly	IEP	HCCA
BP	GO:0065004	protein-DNA complex assembly	IEP	HCCA
MF	GO:0070008	serine-type exopeptidase activity	IEP	HCCA
BP	GO:0071824	protein-DNA complex subunit organization	IEP	HCCA
MF	GO:0140296	general transcription initiation factor binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001985	S-AdoMet_decarboxylase	174	308
IPR001985	S-AdoMet_decarboxylase	5	168

External Links

No external refs found!

GSVIVT01017856001 (SAMDC4, BUD2)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation