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  5. GSVIVT01017346001

GSVIVT01017346001 (EMB33, SUS2, EMB177, EMB14)


Aliases : EMB33, SUS2, EMB177, EMB14

Description : RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U5 small nuclear ribonucleoprotein particle (snRNP).PRPF8/SUS2 protein component


Gene families : OG0003463 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003463_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01017346001
Cluster HCCA: Cluster_75

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00046p00089870 EMB33, SUS2,... RNA processing.RNA splicing.U2-type-intron-specific... 0.08 OrthoFinder output from all 47 species
AT1G80070 EMB33, SUS2,... Pre-mRNA-processing-splicing factor 0.14 OrthoFinder output from all 47 species
Ala_g15277 EMB33, SUS2,... protein factor *(PRPF8/SUS2) of MAC... 0.06 OrthoFinder output from all 47 species
Als_g19020 EMB33, SUS2,... not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g29416 EMB33, SUS2,... protein factor *(PRPF8/SUS2) of MAC... 0.1 OrthoFinder output from all 47 species
Aob_g16557 EMB33, SUS2,... protein factor *(PRPF8/SUS2) of MAC... 0.07 OrthoFinder output from all 47 species
Aop_g13684 EMB33, SUS2,... protein factor *(PRPF8/SUS2) of MAC... 0.06 OrthoFinder output from all 47 species
Cba_g15408 EMB33, SUS2,... protein factor *(PRPF8/SUS2) of MAC... 0.05 OrthoFinder output from all 47 species
Ceric.07G006500.1 EMB33, SUS2,... protein factor *(PRPF8/SUS2) of MAC... 0.15 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000093.136 EMB33, SUS2,... Pre-mRNA-processing-splicing factor 8A OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000093.137 EMB33, SUS2,... RNA processing.RNA splicing.U2-type-intron-specific... 0.06 OrthoFinder output from all 47 species
Cre01.g016050 EMB33, SUS2,... RNA processing.RNA splicing.U2-type-intron-specific... 0.02 OrthoFinder output from all 47 species
Dcu_g02064 EMB33, SUS2,... protein factor *(PRPF8/SUS2) of MAC... 0.07 OrthoFinder output from all 47 species
Dde_g02414 EMB33, SUS2,... protein factor *(PRPF8/SUS2) of MAC... 0.03 OrthoFinder output from all 47 species
Gb_00344 EMB33, SUS2,... protein factor PRPF8/SUS2 of U5 small nuclear... 0.1 OrthoFinder output from all 47 species
LOC_Os05g07050.1 EMB33, SUS2,... protein factor PRPF8/SUS2 of U5 small nuclear... 0.11 OrthoFinder output from all 47 species
LOC_Os06g07080.1 EMB33, SUS2,... protein factor PRPF8/SUS2 of U5 small nuclear... 0.08 OrthoFinder output from all 47 species
Len_g05452 EMB33, SUS2,... protein factor *(PRPF8/SUS2) of MAC... 0.08 OrthoFinder output from all 47 species
Len_g21117 EMB33, SUS2,... protein factor *(PRPF8/SUS2) of MAC... 0.03 OrthoFinder output from all 47 species
Len_g31288 EMB33, SUS2,... not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g44858 EMB33, SUS2,... protein factor *(PRPF8/SUS2) of MAC... 0.05 OrthoFinder output from all 47 species
Lfl_g02476 EMB33, SUS2,... protein factor *(PRPF8/SUS2) of MAC... 0.1 OrthoFinder output from all 47 species
MA_7388g0020 EMB33, SUS2,... protein factor PRPF8/SUS2 of U5 small nuclear... 0.11 OrthoFinder output from all 47 species
Mp1g12380.1 EMB33, SUS2,... protein factor PRPF8/SUS2 of U5 small nuclear... 0.06 OrthoFinder output from all 47 species
Msp_g13516 EMB33, SUS2,... protein factor *(PRPF8/SUS2) of MAC... 0.08 OrthoFinder output from all 47 species
Nbi_g04483 EMB33, SUS2,... protein factor *(PRPF8/SUS2) of MAC... 0.04 OrthoFinder output from all 47 species
Ore_g37212 EMB33, SUS2,... protein factor *(PRPF8/SUS2) of MAC... 0.06 OrthoFinder output from all 47 species
Pir_g09836 EMB33, SUS2,... protein factor *(PRPF8/SUS2) of MAC... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0010.g004862 EMB33, SUS2,... protein factor *(PRPF8/SUS2) of MAC... 0.04 OrthoFinder output from all 47 species
Smo173603 EMB33, SUS2,... RNA processing.RNA splicing.U2-type-intron-specific... 0.09 OrthoFinder output from all 47 species
Solyc07g008880.3.1 EMB33, SUS2,... protein factor PRPF8/SUS2 of U5 small nuclear... 0.13 OrthoFinder output from all 47 species
Spa_g12840 EMB33, SUS2,... protein factor *(PRPF8/SUS2) of MAC... 0.08 OrthoFinder output from all 47 species
Tin_g07648 EMB33, SUS2,... protein factor *(PRPF8/SUS2) of MAC... 0.04 OrthoFinder output from all 47 species
Zm00001e030094_P003 EMB33, SUS2,... protein factor PRPF8/SUS2 of U5 small nuclear... 0.11 OrthoFinder output from all 47 species
Zm00001e036397_P001 EMB33, SUS2,... protein factor PRPF8/SUS2 of U5 small nuclear... 0.11 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0000398 mRNA splicing, via spliceosome IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0004197 cysteine-type endopeptidase activity IEP HCCA
MF GO:0004198 calcium-dependent cysteine-type endopeptidase activity IEP HCCA
MF GO:0004674 protein serine/threonine kinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0006606 protein import into nucleus IEP HCCA
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0034504 protein localization to nucleus IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051170 import into nucleus IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR021983 PRP8_domainIV 1772 2001
IPR019580 Prp8_U6-snRNA-bd 1454 1612
IPR019582 RRM_spliceosomal_PrP8 997 1087
IPR019581 Prp8_U5-snRNA-bd 1222 1355
IPR012592 PROCN 407 812
IPR000555 JAMM/MPN+_dom 2113 2211
IPR012591 PRO8NT 68 219
IPR012984 PROCT 2224 2344
No external refs found!