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  5. GSVIVT01016951001

GSVIVT01016951001 (PAB6)


Aliases : PAB6

Description : Protein biosynthesis.translation initiation.mRNA loading.PABP mRNA poly-A-tail binding factor


Gene families : OG0000326 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000326_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01016951001
Cluster HCCA: Cluster_54

Target Alias Description ECC score Gene Family Method Actions
AT1G71770 PAB5 poly(A)-binding protein 5 0.02 OrthoFinder output from all 47 species
Als_g39199 PAB2, PABP2, ATPAB2 mRNA poly-A-tail binding factor *(PABP) & original... 0.02 OrthoFinder output from all 47 species
Als_g41845 PABP4, PAB4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g06118 PAB8, PABP8 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Cba_g13188 PAB2, PABP2, ATPAB2 mRNA poly-A-tail binding factor *(PABP) & original... 0.02 OrthoFinder output from all 47 species
Dcu_g45170 PAB2, PABP2, ATPAB2 mRNA poly-A-tail binding factor *(PABP) & original... 0.05 OrthoFinder output from all 47 species
Dde_g18693 PAB3 not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os03g17030.1 PAB7, LOC_Os03g17030 mRNA poly-A-tail binding factor (PABP) 0.04 OrthoFinder output from all 47 species
Len_g03330 PAB2, PABP2, ATPAB2 mRNA poly-A-tail binding factor *(PABP) & original... 0.03 OrthoFinder output from all 47 species
Solyc09g008620.3.1 PAB7, Solyc09g008620 mRNA poly-A-tail binding factor (PABP) 0.12 OrthoFinder output from all 47 species
Zm00001e037390_P001 PAB5, Zm00001e037390 mRNA poly-A-tail binding factor (PABP) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
MF GO:0004601 peroxidase activity IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
BP GO:0008272 sulfate transport IEP HCCA
MF GO:0008378 galactosyltransferase activity IEP HCCA
MF GO:0015103 inorganic anion transmembrane transporter activity IEP HCCA
MF GO:0015116 sulfate transmembrane transporter activity IEP HCCA
BP GO:0015698 inorganic anion transport IEP HCCA
MF GO:0016209 antioxidant activity IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0072348 sulfur compound transport IEP HCCA
MF GO:1901682 sulfur compound transmembrane transporter activity IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 209 277
IPR000504 RRM_dom 119 186
IPR000504 RRM_dom 311 379
IPR000504 RRM_dom 31 100
No external refs found!