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  5. GSVIVT01016151001

GSVIVT01016151001


Description : Vesicle trafficking.Coat protein I (COPI) coatomer machinery.coat protein complex.cargo adaptor F-subcomplex.beta subunit


Gene families : OG0002649 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002649_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01016151001

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020553.156 No alias Vesicle trafficking.Coat protein I (COPI) coatomer... 0.01 OrthoFinder output from all 47 species
Dcu_g03132 No alias subunit beta of cargo adaptor F-subcomplex & original... 0.02 OrthoFinder output from all 47 species
LOC_Os01g17430.1 LOC_Os01g17430 subunit beta of cargo adaptor F-subcomplex 0.03 OrthoFinder output from all 47 species
Len_g12104 No alias subunit beta of cargo adaptor F-subcomplex & original... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005198 structural molecule activity IEA Interproscan
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0016192 vesicle-mediated transport IEA Interproscan
CC GO:0030126 COPI vesicle coat IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005672 transcription factor TFIIA complex IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006367 transcription initiation at RNA polymerase II promoter IEP HCCA
BP GO:0006606 protein import into nucleus IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
MF GO:0030976 thiamine pyrophosphate binding IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0034504 protein localization to nucleus IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
MF GO:0050997 quaternary ammonium group binding IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051170 import into nucleus IEP HCCA
MF GO:0061608 nuclear import signal receptor activity IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
MF GO:0140104 molecular carrier activity IEP HCCA
MF GO:0140142 nucleocytoplasmic carrier activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:1901681 sulfur compound binding IEP HCCA
InterPro domains Description Start Stop
IPR002553 Clathrin/coatomer_adapt-like_N 20 114
IPR002553 Clathrin/coatomer_adapt-like_N 115 443
IPR029446 COPB1_appendage_platform_dom 746 873
IPR011710 Coatomer_bsu_C 602 740
No external refs found!