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  5. GSVIVT01015912001

GSVIVT01015912001 (SAR1, ATNUP160, NUP160)


Aliases : SAR1, ATNUP160, NUP160

Description : Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).outer ring.NUP160 scaffold nucleoporin


Gene families : OG0004742 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004742_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01015912001
Cluster HCCA: Cluster_75

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00041p00138020 SAR1, ATNUP160,... Protein translocation.nucleus.nucleocytoplasmic... 0.08 OrthoFinder output from all 47 species
AT1G33410 SAR1, ATNUP160, NUP160 SUPPRESSOR OF AUXIN RESISTANCE1 0.13 OrthoFinder output from all 47 species
Aev_g48633 SAR1, ATNUP160, NUP160 scaffold nucleoporin of nuclear pore complex *(NUP160) &... 0.05 OrthoFinder output from all 47 species
Als_g01978 SAR1, ATNUP160, NUP160 scaffold nucleoporin of nuclear pore complex *(NUP160) &... 0.02 OrthoFinder output from all 47 species
Aop_g07555 SAR1, ATNUP160, NUP160 scaffold nucleoporin of nuclear pore complex *(NUP160) &... 0.05 OrthoFinder output from all 47 species
Azfi_s0006.g010410 SAR1, ATNUP160, NUP160 scaffold nucleoporin of nuclear pore complex *(NUP160) &... 0.03 OrthoFinder output from all 47 species
Ceric.32G022400.1 SAR1, ATNUP160,... scaffold nucleoporin of nuclear pore complex *(NUP160) &... 0.06 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000691.37 No alias No description available 0.02 OrthoFinder output from all 47 species
Cre07.g324000 No alias No description available 0.06 OrthoFinder output from all 47 species
Dac_g09396 SAR1, ATNUP160, NUP160 scaffold nucleoporin of nuclear pore complex *(NUP160) &... 0.02 OrthoFinder output from all 47 species
Dcu_g09122 SAR1, ATNUP160, NUP160 scaffold nucleoporin of nuclear pore complex *(NUP160) &... 0.07 OrthoFinder output from all 47 species
Dde_g26399 SAR1, ATNUP160, NUP160 scaffold nucleoporin of nuclear pore complex *(NUP160) &... 0.04 OrthoFinder output from all 47 species
Gb_36285 SAR1, ATNUP160, NUP160 NUP160 scaffold nucleoporin of nuclear pore complex 0.07 OrthoFinder output from all 47 species
Gb_36286 SAR1, ATNUP160, NUP160 NUP160 scaffold nucleoporin of nuclear pore complex 0.07 OrthoFinder output from all 47 species
LOC_Os02g04970.1 SAR1, ATNUP160,... NUP160 scaffold nucleoporin of nuclear pore complex 0.07 OrthoFinder output from all 47 species
Lfl_g11272 SAR1, ATNUP160, NUP160 scaffold nucleoporin of nuclear pore complex *(NUP160) &... 0.04 OrthoFinder output from all 47 species
MA_10430989g0010 SAR1, ATNUP160, NUP160 Nuclear pore complex protein NUP160 OS=Arabidopsis... 0.11 OrthoFinder output from all 47 species
MA_10436566g0010 No alias no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
MA_33415g0010 SAR1, ATNUP160, NUP160 NUP160 scaffold nucleoporin of nuclear pore complex 0.07 OrthoFinder output from all 47 species
Mp8g11350.1 SAR1, ATNUP160, NUP160 NUP160 scaffold nucleoporin of nuclear pore complex 0.05 OrthoFinder output from all 47 species
Msp_g14433 SAR1, ATNUP160, NUP160 scaffold nucleoporin of nuclear pore complex *(NUP160) &... 0.03 OrthoFinder output from all 47 species
Ore_g16665 SAR1, ATNUP160, NUP160 scaffold nucleoporin of nuclear pore complex *(NUP160) &... 0.03 OrthoFinder output from all 47 species
Pir_g04204 SAR1, ATNUP160, NUP160 scaffold nucleoporin of nuclear pore complex *(NUP160) &... 0.02 OrthoFinder output from all 47 species
Ppi_g16275 SAR1, ATNUP160, NUP160 scaffold nucleoporin of nuclear pore complex *(NUP160) &... 0.04 OrthoFinder output from all 47 species
Smo445056 SAR1, ATNUP160, NUP160 Protein translocation.nucleus.nucleocytoplasmic... 0.04 OrthoFinder output from all 47 species
Solyc01g102540.3.1 SAR1, ATNUP160,... NUP160 scaffold nucleoporin of nuclear pore complex 0.06 OrthoFinder output from all 47 species
Solyc01g102550.4.1 SAR1, ATNUP160,... Nuclear pore complex protein NUP160 OS=Arabidopsis... 0.06 OrthoFinder output from all 47 species
Spa_g07635 SAR1, ATNUP160, NUP160 scaffold nucleoporin of nuclear pore complex *(NUP160) &... 0.04 OrthoFinder output from all 47 species
Tin_g09156 SAR1, ATNUP160, NUP160 scaffold nucleoporin of nuclear pore complex *(NUP160) &... 0.03 OrthoFinder output from all 47 species
Zm00001e013640_P002 SAR1, ATNUP160,... NUP160 scaffold nucleoporin of nuclear pore complex 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP HCCA
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0003980 UDP-glucose:glycoprotein glucosyltransferase activity IEP HCCA
MF GO:0004197 cysteine-type endopeptidase activity IEP HCCA
MF GO:0004198 calcium-dependent cysteine-type endopeptidase activity IEP HCCA
MF GO:0004674 protein serine/threonine kinase activity IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016485 protein processing IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
MF GO:0043015 gamma-tubulin binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR035192 NUP160 546 739
No external refs found!