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  5. GSVIVT01014695001

GSVIVT01014695001


No description available


Gene families : OG0006886 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006886_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01014695001
Cluster HCCA: Cluster_44

Target Alias Description ECC score Gene Family Method Actions
AT3G13180 No alias NOL1/NOP2/sun family protein / antitermination NusB... 0.07 OrthoFinder output from all 47 species
Ala_g25712 No alias RsmB-type rRNA methyltransferase & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g66025 No alias NSUN-group-II rRNA methyltransferase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene10367.t1 Aspi01Gene10367 NSUN-group-II rRNA methyltransferase & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0292.g063407 No alias not classified & original description: CDS=68-1600 0.05 OrthoFinder output from all 47 species
Ceric.10G067000.1 Ceric.10G067000 not classified & original description: pacid=50612186... 0.04 OrthoFinder output from all 47 species
Cre50.g761447 No alias No description available 0.02 OrthoFinder output from all 47 species
Dcu_g12857 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os09g30100.1 LOC_Os09g30100 no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
MA_122179g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp4g02490.1 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Ore_g45412 No alias RsmB-type rRNA methyltransferase & original description: none 0.04 OrthoFinder output from all 47 species
Smo136794 No alias No description available 0.05 OrthoFinder output from all 47 species
Solyc12g015710.2.1 Solyc12g015710 no hits & (original description: none) 0.09 OrthoFinder output from all 47 species
Zm00001e010024_P001 Zm00001e010024 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
BP GO:0006355 regulation of DNA-templated transcription IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004784 superoxide dismutase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004817 cysteine-tRNA ligase activity IEP HCCA
MF GO:0004853 uroporphyrinogen decarboxylase activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006423 cysteinyl-tRNA aminoacylation IEP HCCA
BP GO:0006644 phospholipid metabolic process IEP HCCA
BP GO:0006650 glycerophospholipid metabolic process IEP HCCA
BP GO:0006661 phosphatidylinositol biosynthetic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006778 porphyrin-containing compound metabolic process IEP HCCA
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP HCCA
BP GO:0006801 superoxide metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
BP GO:0008654 phospholipid biosynthetic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016721 oxidoreductase activity, acting on superoxide radicals as acceptor IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0045017 glycerolipid biosynthetic process IEP HCCA
BP GO:0046474 glycerophospholipid biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046486 glycerolipid metabolic process IEP HCCA
BP GO:0046488 phosphatidylinositol metabolic process IEP HCCA
BP GO:0046854 phosphatidylinositol phosphate biosynthetic process IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0072593 reactive oxygen species metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR001678 MeTrfase_RsmB/NOP2 327 521
IPR006027 NusB_RsmB_TIM44 95 198
No external refs found!