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  5. GSVIVT01013706001

GSVIVT01013706001


Description : 30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea


Gene families : OG0002842 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002842_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01013706001
Cluster HCCA: Cluster_44

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00131p00066980 evm_27.TU.AmTr_v1... 30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea 0.05 OrthoFinder output from all 47 species
AT1G71720 No alias Nucleic acid-binding proteins superfamily 0.05 OrthoFinder output from all 47 species
Adi_g060943 No alias mRNA chaperone *(RLSB/BSF) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g084122 No alias mRNA chaperone *(RLSB/BSF) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g31939 No alias mRNA chaperone *(RLSB/BSF) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g11259 No alias mRNA chaperone *(RLSB/BSF) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g21517 No alias mRNA chaperone *(RLSB/BSF) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene47105.t1 Aspi01Gene47105 mRNA chaperone *(RLSB/BSF) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.06G070600.1 Ceric.06G070600 mRNA chaperone *(RLSB/BSF) & original description:... 0.06 OrthoFinder output from all 47 species
Ceric.09G007500.1 Ceric.09G007500 not classified & original description: pacid=50587358... 0.08 OrthoFinder output from all 47 species
Ceric.39G005900.1 Ceric.39G005900 mRNA chaperone *(RLSB/BSF) & original description:... 0.04 OrthoFinder output from all 47 species
Dde_g09799 No alias mRNA chaperone *(RLSB/BSF) & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g26475 No alias mRNA chaperone *(RLSB/BSF) & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os01g40640.1 LOC_Os01g40640 plastidial mRNA chaperone (RLSB/BSF) 0.04 OrthoFinder output from all 47 species
LOC_Os05g45920.1 LOC_Os05g45920 plastidial mRNA chaperone (RLSB/BSF) 0.06 OrthoFinder output from all 47 species
Len_g21211 No alias mRNA chaperone *(RLSB/BSF) & original description: none 0.03 OrthoFinder output from all 47 species
MA_336179g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Msp_g06256 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g04958 No alias mRNA chaperone *(RLSB/BSF) & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g16529 No alias mRNA chaperone *(RLSB/BSF) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g15780 No alias mRNA chaperone *(RLSB/BSF) & original description: none 0.05 OrthoFinder output from all 47 species
Solyc04g072036.1.1 Solyc04g072036 plastidial mRNA chaperone (RLSB/BSF) 0.09 OrthoFinder output from all 47 species
Spa_g17865 No alias mRNA chaperone *(RLSB/BSF) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e032251_P002 Zm00001e032251 plastidial mRNA chaperone (RLSB/BSF) 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0004418 hydroxymethylbilane synthase activity IEP HCCA
MF GO:0004784 superoxide dismutase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004817 cysteine-tRNA ligase activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006423 cysteinyl-tRNA aminoacylation IEP HCCA
BP GO:0006605 protein targeting IEP HCCA
BP GO:0006612 protein targeting to membrane IEP HCCA
BP GO:0006613 cotranslational protein targeting to membrane IEP HCCA
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP HCCA
BP GO:0006801 superoxide metabolic process IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
MF GO:0016721 oxidoreductase activity, acting on superoxide radicals as acceptor IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0045047 protein targeting to ER IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0051668 localization within membrane IEP HCCA
BP GO:0070972 protein localization to endoplasmic reticulum IEP HCCA
MF GO:0071949 FAD binding IEP HCCA
BP GO:0072593 reactive oxygen species metabolic process IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP HCCA
BP GO:0072657 protein localization to membrane IEP HCCA
BP GO:0090150 establishment of protein localization to membrane IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR003029 S1_domain 216 281
IPR003029 S1_domain 292 352
No external refs found!