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  5. GSVIVT01012249001

GSVIVT01012249001 (AGL2, SEP1)


Aliases : AGL2, SEP1

Description : RNA biosynthesis.transcriptional activation.MADS box transcription factor


Gene families : OG0000022 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01012249001

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00267050 AGL6,... RNA biosynthesis.transcriptional activation.MADS box... 0.04 OrthoFinder output from all 47 species
AMTR_s00021p00254030 SHP2, AGL5,... RNA biosynthesis.transcriptional activation.MADS box... 0.04 OrthoFinder output from all 47 species
AMTR_s00047p00190220 AGL4, SEP2,... RNA biosynthesis.transcriptional activation.MADS box... 0.06 OrthoFinder output from all 47 species
AMTR_s00053p00228660 AGL15,... RNA biosynthesis.transcriptional activation.MADS box... 0.04 OrthoFinder output from all 47 species
AMTR_s00071p00198970 XAL1, AGL12,... RNA biosynthesis.transcriptional activation.MADS box... 0.02 OrthoFinder output from all 47 species
AMTR_s00109p00015260 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.04 OrthoFinder output from all 47 species
AT1G22130 AGL104 AGAMOUS-like 104 0.02 OrthoFinder output from all 47 species
AT1G24260 AGL9, SEP3 K-box region and MADS-box transcription factor family protein 0.03 OrthoFinder output from all 47 species
AT1G77950 AGL67 AGAMOUS-like 67 0.02 OrthoFinder output from all 47 species
AT2G42830 SHP2, AGL5 K-box region and MADS-box transcription factor family protein 0.03 OrthoFinder output from all 47 species
AT3G02310 AGL4, SEP2 K-box region and MADS-box transcription factor family protein 0.02 OrthoFinder output from all 47 species
AT3G30260 AGL79 AGAMOUS-like 79 0.04 OrthoFinder output from all 47 species
Aev_g17392 AGL71 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g20345 AGL7, AP1 MADS/AGL-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g46452 AGL104 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g28240 SHP2, AGL5 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g33008 SHP2, AGL5 MADS/AGL-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene13944.t1 AGL18, Aspi01Gene13944 MADS/AGL-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene15820.t1 SOC1, AGL20,... MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene17593.t1 AGL104, Aspi01Gene17593 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene17774.t1 SHP2, AGL5,... MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene44552.t1 AGL13, Aspi01Gene44552 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene49756.t1 STK, AGL11,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene54037.t1 Aspi01Gene54037 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene54037.t3 Aspi01Gene54037 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene62317.t1 ANR1, AGL44,... MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s2186.g109823 No alias not classified & original description: CDS=5-496 0.06 OrthoFinder output from all 47 species
Cba_g13784 SHP2, AGL5 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g37029 AGL16 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g76647 STK, AGL11 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.07G094900.1 AGL7, AP1,... MADS/AGL-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ceric.08G048300.1 AGL42, Ceric.08G048300 MADS/AGL-type transcription factor & original... 0.11 OrthoFinder output from all 47 species
Ceric.08G048600.1 AGL10, CAL1,... not classified & original description: pacid=50638045... 0.12 OrthoFinder output from all 47 species
Ceric.12G052800.1 GL19, AGL19,... MADS/AGL-type transcription factor & original... 0.04 OrthoFinder output from all 47 species
Ceric.33G065500.1 AGL13, Ceric.33G065500 MADS/AGL-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ceric.37G052700.1 AGL104, Ceric.37G052700 MADS/AGL-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ceric.38G021500.1 AGL2, SEP1,... MADS/AGL-type transcription factor & original... 0.06 OrthoFinder output from all 47 species
Dac_g08553 GL19, AGL19 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g11868 AGL104 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g15323 ANR1, AGL44 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g20590 AGL30 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g25491 AGL8, FUL MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g51026 AGL42 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g27385 AGL21 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01003864001 AGL16 RNA biosynthesis.transcriptional activation.MADS box... 0.06 OrthoFinder output from all 47 species
GSVIVT01006592001 AGL61, DIA RNA biosynthesis.transcriptional activation.MADS box... 0.04 OrthoFinder output from all 47 species
GSVIVT01008560001 SOC1, AGL20, ATSOC1 RNA biosynthesis.transcriptional activation.MADS box... 0.03 OrthoFinder output from all 47 species
GSVIVT01010221001 AGL62 RNA biosynthesis.transcriptional activation.MADS box... 0.05 OrthoFinder output from all 47 species
GSVIVT01014093001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.03 OrthoFinder output from all 47 species
Gb_03068 AGL16 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Gb_28587 AGL8, FUL transcription factor (MADS/AGL) 0.04 OrthoFinder output from all 47 species
LOC_Os02g07430.1 AGL32, TT16,... transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
LOC_Os03g54160.1 AGL7, AP1, LOC_Os03g54160 transcription factor (MADS/AGL) 0.04 OrthoFinder output from all 47 species
LOC_Os06g01890.1 SOC1, AGL20,... transcription factor (MADS/AGL) 0.04 OrthoFinder output from all 47 species
LOC_Os06g11330.1 SVP, AGL22,... transcription factor (MADS/AGL) 0.04 OrthoFinder output from all 47 species
Len_g22235 SOC1, AGL20, ATSOC1 MADS/AGL-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Len_g22237 SOC1, AGL20, ATSOC1 MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Len_g28933 GL19, AGL19 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g48343 AGL16 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Len_g49478 GL19, AGL19 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g52703 SHP2, AGL5 MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g26035 AGL7, AP1 MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g38767 SOC1, AGL20, ATSOC1 MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
MA_2986g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_5917g0010 AGL9, SEP3 transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
MA_6544g0010 STK, AGL11 Floral homeotic protein AGAMOUS OS=Panax ginseng... 0.05 OrthoFinder output from all 47 species
MA_899014g0010 SVP, AGL22 transcription factor (MADS/AGL) 0.05 OrthoFinder output from all 47 species
Msp_g09451 AGL21 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g31321 AGL16 MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g31707 SOC1, AGL20, ATSOC1 MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g23267 AGL70, MAF3, FCL3 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g55140 GL19, AGL19 MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002217 AGL15 MADS/AGL-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0027.g009704 ANR1, AGL44 MADS/AGL-type transcription factor & original... 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0271.g027022 AGL7, AP1 MADS/AGL-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Sam_g13249 No alias MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g27719 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g29030 No alias MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g48748 No alias MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g48749 No alias MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Solyc02g071730.4.1 SHP2, AGL5,... transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Solyc02g089200.4.1 AGL2, SEP1,... transcription factor (MADS/AGL) 0.05 OrthoFinder output from all 47 species
Solyc05g015750.3.1 AGL9, SEP3,... transcription factor (MADS/AGL) 0.04 OrthoFinder output from all 47 species
Solyc10g080030.2.1 AGL18, Solyc10g080030 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Spa_g10405 AGL2, SEP1 MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g12045 GL19, AGL19 MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g27559 AGL10, CAL1, CAL MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g29118 AGL21 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g31312 AGL2, SEP1 MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g47544 AGL16 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g51497 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g23921 AGL7, AP1 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g45158 AGL7, AP1 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e013738_P001 AGL32, TT16,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Zm00001e015447_P001 AGL6, Zm00001e015447 transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Zm00001e018993_P001 AGL62, Zm00001e018993 transcription factor (MADS/AGL) 0.04 OrthoFinder output from all 47 species
Zm00001e027034_P001 PI, Zm00001e027034 transcription factor (MADS/AGL) 0.06 OrthoFinder output from all 47 species
Zm00001e034629_P001 AGL9, SEP3,... transcription factor (MADS/AGL) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006355 regulation of DNA-templated transcription IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0004888 transmembrane signaling receptor activity IEP HCCA
MF GO:0004970 ionotropic glutamate receptor activity IEP HCCA
MF GO:0005215 transporter activity IEP HCCA
MF GO:0005216 monoatomic ion channel activity IEP HCCA
MF GO:0005230 extracellular ligand-gated monoatomic ion channel activity IEP HCCA
MF GO:0008066 glutamate receptor activity IEP HCCA
MF GO:0015267 channel activity IEP HCCA
MF GO:0015276 ligand-gated monoatomic ion channel activity IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
MF GO:0022824 transmitter-gated monoatomic ion channel activity IEP HCCA
MF GO:0022834 ligand-gated channel activity IEP HCCA
MF GO:0022835 transmitter-gated channel activity IEP HCCA
MF GO:0022836 gated channel activity IEP HCCA
MF GO:0022839 monoatomic ion gated channel activity IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
MF GO:0030594 neurotransmitter receptor activity IEP HCCA
MF GO:0038023 signaling receptor activity IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
MF GO:0060089 molecular transducer activity IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR002100 TF_MADSbox 10 57
IPR002487 TF_Kbox 84 171
No external refs found!