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  5. GSVIVT01011687001

GSVIVT01011687001 (PCR2)


Aliases : PCR2

Description : Cell number regulator 2 OS=Zea mays


Gene families : OG0000293 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000293_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01011687001

Target Alias Description ECC score Gene Family Method Actions
AT1G14880 PCR1 PLANT CADMIUM RESISTANCE 1 0.06 OrthoFinder output from all 47 species
AT1G52200 No alias PLAC8 family protein 0.04 OrthoFinder output from all 47 species
AT1G58320 No alias PLAC8 family protein 0.03 OrthoFinder output from all 47 species
Aop_g19410 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.05G039000.1 Ceric.05G039000 not classified & original description: pacid=50578200... 0.03 OrthoFinder output from all 47 species
Ceric.31G000100.1 Ceric.31G000100 not classified & original description: pacid=50575022... 0.04 OrthoFinder output from all 47 species
Dde_g16541 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01011927001 No alias No description available 0.04 OrthoFinder output from all 47 species
GSVIVT01011928001 No alias Protein PLANT CADMIUM RESISTANCE 12 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Gb_14595 No alias Protein PLANT CADMIUM RESISTANCE 6 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Gb_37164 No alias Cell number regulator 2 OS=Zea mays... 0.03 OrthoFinder output from all 47 species
Gb_37165 No alias Cell number regulator 9 OS=Zea mays... 0.03 OrthoFinder output from all 47 species
LOC_Os02g36940.1 LOC_Os02g36940 Cell number regulator 2 OS=Zea mays... 0.07 OrthoFinder output from all 47 species
LOC_Os10g02300.3 LOC_Os10g02300 Cell number regulator 10 OS=Zea mays... 0.07 OrthoFinder output from all 47 species
Len_g19764 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g49051 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_102043g0010 PCR2 Protein PLANT CADMIUM RESISTANCE 2 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_23074g0010 No alias Cell number regulator 1 OS=Zea mays... 0.04 OrthoFinder output from all 47 species
MA_79837g0010 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
MA_9985208g0010 PCR2 Protein PLANT CADMIUM RESISTANCE 6 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Mp4g22340.1 No alias Protein PLANT CADMIUM RESISTANCE 7 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Solyc01g005470.3.1 PCR2, Solyc01g005470 Protein PLANT CADMIUM RESISTANCE 2 OS=Arabidopsis... 0.1 OrthoFinder output from all 47 species
Solyc03g119660.2.1 Solyc03g119660 Protein PLANT CADMIUM RESISTANCE 6 OS=Arabidopsis... 0.08 OrthoFinder output from all 47 species
Solyc03g120600.4.1 Solyc03g120600 Protein PLANT CADMIUM RESISTANCE 8 OS=Arabidopsis... 0.07 OrthoFinder output from all 47 species
Solyc04g007900.3.1 PCR2, Solyc04g007900 Protein PLANT CADMIUM RESISTANCE 2 OS=Arabidopsis... 0.1 OrthoFinder output from all 47 species
Solyc06g066590.4.1 Solyc06g066590 Protein PLANT CADMIUM RESISTANCE 8 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Zm00001e011704_P001 PCR2, Zm00001e011704 Cell number regulator 10 OS=Zea mays... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005516 calmodulin binding IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
MF GO:0030246 carbohydrate binding IEP HCCA
MF GO:0030247 polysaccharide binding IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR006461 PLAC_motif_containing 61 159
No external refs found!