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Aliases : THO2, AtTHO2
Description : RNA processing.messenger ribonucleoprotein particle (mRNP).mRNP export.TREX/THO mRNP trafficking complex.THO subcomplex.THOC2/Tho2 component
Gene families : OG0003635 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003635_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: GSVIVT01011619001 | |
| Cluster | HCCA: Cluster_75 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00138p00044110 | THO2, AtTHO2,... | RNA processing.messenger ribonucleoprotein particle... | 0.13 | OrthoFinder output from all 47 species | |
| AT1G24706 | THO2, AtTHO2 | THO2 | 0.21 | OrthoFinder output from all 47 species | |
| Adi_g107430 | THO2, AtTHO2 | component *(THOC2/Tho2) of mRNP trafficking THO... | 0.06 | OrthoFinder output from all 47 species | |
| Aev_g08657 | THO2, AtTHO2 | component *(THOC2/Tho2) of mRNP trafficking THO... | 0.08 | OrthoFinder output from all 47 species | |
| Ala_g38322 | THO2, AtTHO2 | component *(THOC2/Tho2) of mRNP trafficking THO... | 0.07 | OrthoFinder output from all 47 species | |
| Als_g01214 | THO2, AtTHO2 | component *(THOC2/Tho2) of mRNP trafficking THO... | 0.04 | OrthoFinder output from all 47 species | |
| Aob_g29810 | THO2, AtTHO2 | component *(THOC2/Tho2) of mRNP trafficking THO... | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g07582 | THO2, AtTHO2 | component *(THOC2/Tho2) of mRNP trafficking THO... | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene09828.t1 | THO2, AtTHO2,... | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Aspi01Gene09832.t1 | THO2, AtTHO2,... | component *(THOC2/Tho2) of mRNP trafficking THO... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.19G073400.1 | THO2, AtTHO2,... | component *(THOC2/Tho2) of mRNP trafficking THO... | 0.11 | OrthoFinder output from all 47 species | |
| Cpa|evm.model.tig00001428.15 | THO2, AtTHO2 | RNA processing.messenger ribonucleoprotein particle... | 0.02 | OrthoFinder output from all 47 species | |
| Cre12.g507700 | THO2, AtTHO2 | RNA processing.messenger ribonucleoprotein particle... | 0.02 | OrthoFinder output from all 47 species | |
| Dac_g15531 | THO2, AtTHO2 | component *(THOC2/Tho2) of mRNP trafficking THO... | 0.04 | OrthoFinder output from all 47 species | |
| Dcu_g02056 | THO2, AtTHO2 | component *(THOC2/Tho2) of mRNP trafficking THO... | 0.16 | OrthoFinder output from all 47 species | |
| Gb_33812 | THO2, AtTHO2 | component THOC2/Tho2 of mRNP trafficking THO subcomplex | 0.07 | OrthoFinder output from all 47 species | |
| LOC_Os01g68810.1 | THO2, AtTHO2,... | component THOC2/Tho2 of mRNP trafficking THO subcomplex | 0.07 | OrthoFinder output from all 47 species | |
| Len_g01408 | THO2, AtTHO2 | component *(THOC2/Tho2) of mRNP trafficking THO... | 0.04 | OrthoFinder output from all 47 species | |
| Lfl_g04297 | THO2, AtTHO2 | component *(THOC2/Tho2) of mRNP trafficking THO... | 0.08 | OrthoFinder output from all 47 species | |
| MA_10184563g0010 | THO2, AtTHO2 | component THOC2/Tho2 of mRNP trafficking THO subcomplex | 0.03 | OrthoFinder output from all 47 species | |
| MA_10430572g0010 | THO2, AtTHO2 | component THOC2/Tho2 of mRNP trafficking THO subcomplex | 0.08 | OrthoFinder output from all 47 species | |
| MA_10431208g0010 | THO2, AtTHO2 | component THOC2/Tho2 of mRNP trafficking THO subcomplex | 0.03 | OrthoFinder output from all 47 species | |
| Mp1g20320.1 | THO2, AtTHO2 | component THOC2/Tho2 of mRNP trafficking THO subcomplex | 0.13 | OrthoFinder output from all 47 species | |
| Msp_g02102 | THO2, AtTHO2 | component *(THOC2/Tho2) of mRNP trafficking THO... | 0.03 | OrthoFinder output from all 47 species | |
| Nbi_g01515 | THO2, AtTHO2 | component *(THOC2/Tho2) of mRNP trafficking THO... | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g16129 | THO2, AtTHO2 | component *(THOC2/Tho2) of mRNP trafficking THO... | 0.09 | OrthoFinder output from all 47 species | |
| Pir_g17399 | THO2, AtTHO2 | component *(THOC2/Tho2) of mRNP trafficking THO... | 0.04 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0104.g020047 | THO2, AtTHO2 | component *(THOC2/Tho2) of mRNP trafficking THO... | 0.06 | OrthoFinder output from all 47 species | |
| Smo173562 | THO2, AtTHO2 | RNA processing.messenger ribonucleoprotein particle... | 0.14 | OrthoFinder output from all 47 species | |
| Solyc05g017890.4.1 | THO2, AtTHO2,... | component THOC2/Tho2 of mRNP trafficking THO subcomplex | 0.12 | OrthoFinder output from all 47 species | |
| Spa_g18725 | THO2, AtTHO2 | component *(THOC2/Tho2) of mRNP trafficking THO... | 0.06 | OrthoFinder output from all 47 species | |
| Tin_g08678 | THO2, AtTHO2 | component *(THOC2/Tho2) of mRNP trafficking THO... | 0.05 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000184 | nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | IEP | HCCA |
| BP | GO:0000956 | nuclear-transcribed mRNA catabolic process | IEP | HCCA |
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0004386 | helicase activity | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| MF | GO:0005515 | protein binding | IEP | HCCA |
| MF | GO:0005524 | ATP binding | IEP | HCCA |
| BP | GO:0006401 | RNA catabolic process | IEP | HCCA |
| BP | GO:0006402 | mRNA catabolic process | IEP | HCCA |
| BP | GO:0006606 | protein import into nucleus | IEP | HCCA |
| BP | GO:0006913 | nucleocytoplasmic transport | IEP | HCCA |
| BP | GO:0009892 | negative regulation of metabolic process | IEP | HCCA |
| BP | GO:0010605 | negative regulation of macromolecule metabolic process | IEP | HCCA |
| BP | GO:0010629 | negative regulation of gene expression | IEP | HCCA |
| BP | GO:0016071 | mRNA metabolic process | IEP | HCCA |
| BP | GO:0016579 | protein deubiquitination | IEP | HCCA |
| BP | GO:0019439 | aromatic compound catabolic process | IEP | HCCA |
| BP | GO:0033365 | protein localization to organelle | IEP | HCCA |
| BP | GO:0034504 | protein localization to nucleus | IEP | HCCA |
| BP | GO:0034655 | nucleobase-containing compound catabolic process | IEP | HCCA |
| BP | GO:0044270 | cellular nitrogen compound catabolic process | IEP | HCCA |
| BP | GO:0046700 | heterocycle catabolic process | IEP | HCCA |
| BP | GO:0048519 | negative regulation of biological process | IEP | HCCA |
| BP | GO:0051169 | nuclear transport | IEP | HCCA |
| BP | GO:0051170 | import into nucleus | IEP | HCCA |
| BP | GO:0070646 | protein modification by small protein removal | IEP | HCCA |
| BP | GO:0072594 | establishment of protein localization to organelle | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| BP | GO:1901361 | organic cyclic compound catabolic process | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
| No external refs found! |