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  5. GSVIVT01009243001

GSVIVT01009243001


Description : RNA processing.RNA 3-end polyadenylation.Cleavage and Polyadenylation Specificity Factor (CPSF) complex.Symplekin/Pta1 component


Gene families : OG0002204 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002204_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01009243001

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00088050 ESP4,... RNA processing.RNA 3-end polyadenylation.Cleavage and... 0.02 OrthoFinder output from all 47 species
AMTR_s00033p00031310 evm_27.TU.AmTr_v1... RNA processing.RNA 3-end polyadenylation.Cleavage and... 0.02 OrthoFinder output from all 47 species
AT1G27595 No alias CONTAINS InterPro DOMAIN/s: Symplekin tight junction... 0.03 OrthoFinder output from all 47 species
AT5G01400 ESP4 HEAT repeat-containing protein 0.04 OrthoFinder output from all 47 species
Ala_g04252 No alias component *(Symplekin/Pta1) of Cleavage and... 0.03 OrthoFinder output from all 47 species
Als_g09476 ESP4 component *(Symplekin/Pta1) of Cleavage and... 0.03 OrthoFinder output from all 47 species
Als_g23718 No alias component *(Symplekin/Pta1) of Cleavage and... 0.02 OrthoFinder output from all 47 species
Als_g63126 ESP4 component *(Symplekin/Pta1) of Cleavage and... 0.03 OrthoFinder output from all 47 species
Aop_g08267 ESP4 component *(Symplekin/Pta1) of Cleavage and... 0.02 OrthoFinder output from all 47 species
Aspi01Gene71059.t2 Aspi01Gene71059 component *(Symplekin/Pta1) of Cleavage and... 0.03 OrthoFinder output from all 47 species
Azfi_s0003.g007850 No alias component *(Symplekin/Pta1) of Cleavage and... 0.04 OrthoFinder output from all 47 species
Azfi_s0006.g010125 ESP4 component *(Symplekin/Pta1) of Cleavage and... 0.03 OrthoFinder output from all 47 species
Ceric.01G050700.1 Ceric.01G050700 component *(Symplekin/Pta1) of Cleavage and... 0.03 OrthoFinder output from all 47 species
Ceric.12G019100.1 ESP4, Ceric.12G019100 component *(Symplekin/Pta1) of Cleavage and... 0.04 OrthoFinder output from all 47 species
Dcu_g02040 No alias component *(Symplekin/Pta1) of Cleavage and... 0.03 OrthoFinder output from all 47 species
Dde_g04949 ESP4 component *(Symplekin/Pta1) of Cleavage and... 0.04 OrthoFinder output from all 47 species
LOC_Os01g49940.1 LOC_Os01g49940 component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.05 OrthoFinder output from all 47 species
LOC_Os07g49320.1 ESP4, LOC_Os07g49320 component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species
Len_g14162 ESP4 component *(Symplekin/Pta1) of Cleavage and... 0.03 OrthoFinder output from all 47 species
Len_g19439 No alias component *(Symplekin/Pta1) of Cleavage and... 0.04 OrthoFinder output from all 47 species
Lfl_g06265 No alias component *(Symplekin/Pta1) of Cleavage and... 0.03 OrthoFinder output from all 47 species
Msp_g24896 ESP4 component *(Symplekin/Pta1) of Cleavage and... 0.02 OrthoFinder output from all 47 species
Pir_g03429 ESP4 component *(Symplekin/Pta1) of Cleavage and... 0.02 OrthoFinder output from all 47 species
Ppi_g15043 ESP4 component *(Symplekin/Pta1) of Cleavage and... 0.05 OrthoFinder output from all 47 species
Smo442688 ESP4 RNA processing.RNA 3-end polyadenylation.Cleavage and... 0.03 OrthoFinder output from all 47 species
Solyc09g005330.3.1 ESP4, Solyc09g005330 component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species
Tin_g06134 ESP4 component *(Symplekin/Pta1) of Cleavage and... 0.03 OrthoFinder output from all 47 species
Zm00001e020082_P004 Zm00001e020082 component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.04 OrthoFinder output from all 47 species
Zm00001e035946_P001 ESP4, Zm00001e035946 component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR032460 Symplekin/Pta1_N 96 240
No external refs found!