1. Home
  2. Species
  3. Vitis vinifera
  4. Sequence
  5. GSVIVT01009083001

GSVIVT01009083001 (ATHB16, HB16, ATHB-16)


Aliases : ATHB16, HB16, ATHB-16

Description : RNA biosynthesis.transcriptional activation.HB (Homeobox) superfamily.HD-ZIP I/II transcription factor


Gene families : OG0000129 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000129_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01009083001
Cluster HCCA: Cluster_15

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00253290 ATHB13,... RNA biosynthesis.transcriptional activation.HB... 0.08 OrthoFinder output from all 47 species
AT5G15150 ATHB3, HB-3, ATHB-3, HAT7 homeobox 3 0.03 OrthoFinder output from all 47 species
AT5G65310 ATHB5, ATHB-5, HB5 homeobox protein 5 0.05 OrthoFinder output from all 47 species
Als_g19276 ATHB21, HB21, HB-2 HD-ZIP I/II-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Aob_g09873 ATHB3, HB-3, ATHB-3, HAT7 HD-ZIP I/II-type transcription factor & original... 0.04 OrthoFinder output from all 47 species
Aspi01Gene48842.t1 ATHB13, Aspi01Gene48842 HD-ZIP I/II-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Azfi_s0040.g026630 ATHB1, ATHB-1,... HD-ZIP I/II-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Cba_g78295 ATHB5, ATHB-5, HB5 HD-ZIP I/II-type transcription factor & original... 0.05 OrthoFinder output from all 47 species
Ceric.03G096000.1 ATHB5, ATHB-5,... HD-ZIP I/II-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ceric.08G017800.1 ATHB1, ATHB-1,... HD-ZIP I/II-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Dac_g00457 ATHB1, ATHB-1,... HD-ZIP I/II-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01008065001 ATHB1, ATHB-1,... RNA biosynthesis.transcriptional activation.HB... 0.04 OrthoFinder output from all 47 species
LOC_Os10g26500.1 ATHB13, LOC_Os10g26500 transcription factor (HD-ZIP I/II) 0.03 OrthoFinder output from all 47 species
Len_g19610 ATHB1, ATHB-1,... HD-ZIP I/II-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Pir_g24965 HB6, ATHB6 HD-ZIP I/II-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Pir_g40580 ATHB13 HD-ZIP I/II-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Pnu_g32938 HB51, ATHB51, LMI1 HD-ZIP I/II-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Zm00001e000659_P001 ATHB5, ATHB-5,... transcription factor (HD-ZIP I/II) 0.06 OrthoFinder output from all 47 species
Zm00001e004824_P001 ATHB3, HB-3,... transcription factor (HD-ZIP I/II) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
InterPro domains Description Start Stop
IPR003106 Leu_zip_homeo 112 154
IPR001356 Homeobox_dom 57 110
No external refs found!