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  5. GSVIVT01008813001

GSVIVT01008813001 (SECA2)


Aliases : SECA2

Description : Protein translocation.chloroplast.inner envelope Sec2 post-import insertion system.SecA2 component


Gene families : OG0001541 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001541_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01008813001

Target Alias Description ECC score Gene Family Method Actions
Adi_g021940 SECA2 component *(SecA2) of inner envelope Sec2 post-import... 0.03 OrthoFinder output from all 47 species
Ala_g19639 SECA2 component *(SecA2) of inner envelope Sec2 post-import... 0.04 OrthoFinder output from all 47 species
Dcu_g04140 SECA2 component *(SecA2) of inner envelope Sec2 post-import... 0.04 OrthoFinder output from all 47 species
LOC_Os11g08980.1 SECA2, LOC_Os11g08980 Protein translocase subunit SECA2, chloroplastic... 0.06 OrthoFinder output from all 47 species
Mp5g18780.1 SECA2 component SecA2 of inner envelope Sec2 post-import... 0.02 OrthoFinder output from all 47 species
Sam_g16150 No alias component *(SecA2) of inner envelope Sec2 post-import... 0.02 OrthoFinder output from all 47 species
Spa_g17299 SECA1, AtcpSecA, AGY1 component *(SecA1) of thylakoid membrane Sec1... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
BP GO:0017038 protein import IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR011130 SecA_preprotein_X-link_dom 312 416
IPR011116 SecA_Wing/Scaffold 779 1054
IPR011115 SecA_DEAD 92 459
No external refs found!