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  5. GSVIVT01007911001

GSVIVT01007911001 (ESP3, EMB2733)


Aliases : ESP3, EMB2733

Description : Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 OS=Arabidopsis thaliana


Gene families : OG0000184 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000184_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01007911001
Cluster HCCA: Cluster_75

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00005p00122600 evm_27.TU.AmTr_v1... Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 OrthoFinder output from all 47 species
AMTR_s00110p00073830 ESP3, EMB2733,... RNA processing.RNA splicing.spliceosome... 0.04 OrthoFinder output from all 47 species
AT1G26370 No alias RNA helicase family protein 0.04 OrthoFinder output from all 47 species
AT1G27900 No alias RNA helicase family protein 0.04 OrthoFinder output from all 47 species
AT1G32490 ESP3, EMB2733 RNA helicase family protein 0.04 OrthoFinder output from all 47 species
AT2G35340 MEE29 helicase domain-containing protein 0.04 OrthoFinder output from all 47 species
AT3G26560 No alias ATP-dependent RNA helicase, putative 0.04 OrthoFinder output from all 47 species
Adi_g060167 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g107993 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g11422 No alias RNA helicase *(Prp22) & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g14240 ESP3, EMB2733 RNA helicase *(Prp2) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g02597 ESP3, EMB2733 RNA helicase *(Prp2) & original description: none 0.07 OrthoFinder output from all 47 species
Ala_g38553 EMB3011 RNA helicase *(Prp16) & original description: none 0.05 OrthoFinder output from all 47 species
Als_g01897 No alias RNA helicase *(Prp22) & original description: none 0.06 OrthoFinder output from all 47 species
Aob_g19131 EMB3011 RNA helicase *(Prp16) & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g15706 ESP3, EMB2733 RNA helicase *(Prp2) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g64809 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0293.g063477 EMB3011 RNA helicase *(Prp16) & original description: CDS=81-3746 0.03 OrthoFinder output from all 47 species
Cba_g13014 EMB3011 RNA helicase *(Prp16) & original description: none 0.06 OrthoFinder output from all 47 species
Cba_g17488 No alias RNA helicase *(Prp22) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g33796 No alias RNA helicase Prp43 of Intron-Lariat Spliceosome complex... 0.02 OrthoFinder output from all 47 species
Ceric.01G059500.1 Ceric.01G059500 not classified & original description: pacid=50591809... 0.05 OrthoFinder output from all 47 species
Ceric.15G036900.1 Ceric.15G036900 RNA helicase *(Prp22) & original description:... 0.1 OrthoFinder output from all 47 species
Ceric.21G075900.1 EMB3011, Ceric.21G075900 RNA helicase *(Prp16) & original description:... 0.06 OrthoFinder output from all 47 species
Ceric.25G032700.1 Ceric.25G032700 RNA helicase Prp43 of Intron-Lariat Spliceosome complex... 0.03 OrthoFinder output from all 47 species
Ceric.34G064900.1 Ceric.34G064900 not classified & original description: pacid=50623889... 0.04 OrthoFinder output from all 47 species
Ceric.37G064800.1 ESP3, EMB2733,... RNA helicase *(Prp2) & original description:... 0.15 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020531.53 EMB3011 Pre-mRNA-splicing factor ATP-dependent RNA helicase... 0.01 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021589.28 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.01 OrthoFinder output from all 47 species
Cre08.g358563 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 OrthoFinder output from all 47 species
Dac_g20233 EMB3011 RNA helicase *(Prp16) & original description: none 0.03 OrthoFinder output from all 47 species
Gb_13411 EMB3011 RNA helicase (Prp16) 0.09 OrthoFinder output from all 47 species
Gb_14269 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 OrthoFinder output from all 47 species
Gb_14270 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.04 OrthoFinder output from all 47 species
LOC_Os01g11370.1 LOC_Os01g11370 Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.04 OrthoFinder output from all 47 species
LOC_Os02g19860.1 LOC_Os02g19860 Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.04 OrthoFinder output from all 47 species
LOC_Os08g24760.1 ESP3, EMB2733,... RNA helicase (Prp2) 0.05 OrthoFinder output from all 47 species
LOC_Os11g20554.1 LOC_Os11g20554 Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.03 OrthoFinder output from all 47 species
Len_g08915 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g09738 ESP3, EMB2733 RNA helicase *(Prp2) & original description: none 0.05 OrthoFinder output from all 47 species
Len_g13066 EMB3011 RNA helicase *(Prp16) & original description: none 0.03 OrthoFinder output from all 47 species
Len_g33083 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g05720 EMB3011 RNA helicase *(Prp16) & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g08910 ESP3, EMB2733 RNA helicase *(Prp2) & original description: none 0.02 OrthoFinder output from all 47 species
MA_629782g0010 EMB3011 Pre-mRNA-splicing factor ATP-dependent RNA helicase... 0.05 OrthoFinder output from all 47 species
Mp2g13680.1 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.03 OrthoFinder output from all 47 species
Mp3g17320.1 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 OrthoFinder output from all 47 species
Msp_g00692 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g14081 EMB3011 RNA helicase *(Prp16) & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g15088 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g16012 ESP3, EMB2733 RNA helicase *(Prp2) & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g03086 No alias RNA helicase *(Prp22) & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g07572 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g21732 ESP3, EMB2733 RNA helicase *(Prp2) & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g10443 ESP3, EMB2733 RNA helicase *(Prp2) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g42980 EMB3011 RNA helicase *(Prp16) & original description: none 0.08 OrthoFinder output from all 47 species
Ore_g42990 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g44705 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g07808 No alias RNA helicase Prp43 of Intron-Lariat Spliceosome complex... 0.03 OrthoFinder output from all 47 species
Pir_g66576 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g00856 ESP3, EMB2733 RNA helicase *(Prp2) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g04698 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g05341 EMB3011 RNA helicase *(Prp16) & original description: none 0.06 OrthoFinder output from all 47 species
Ppi_g17516 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0104.g020058 No alias not classified & original description: CDS=124-963 0.03 OrthoFinder output from all 47 species
Sam_g06275 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g14599 No alias RNA helicase *(Prp16) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g16290 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g25079 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Smo82212 ESP3, EMB2733 RNA processing.RNA splicing.spliceosome... 0.04 OrthoFinder output from all 47 species
Solyc03g115390.4.1 ESP3, EMB2733,... RNA helicase (Prp2) 0.06 OrthoFinder output from all 47 species
Solyc07g039550.4.1 Solyc07g039550 Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.04 OrthoFinder output from all 47 species
Solyc10g076910.2.1 EMB3011, Solyc10g076910 RNA helicase (Prp16) 0.06 OrthoFinder output from all 47 species
Spa_g17882 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g25913 EMB3011 RNA helicase *(Prp16) & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g01282 EMB3011 RNA helicase *(Prp16) & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g02893 ESP3, EMB2733 RNA helicase *(Prp2) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g31207 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e022095_P001 ESP3, EMB2733,... RNA helicase (Prp2) 0.08 OrthoFinder output from all 47 species
Zm00001e036358_P005 Zm00001e036358 Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003909 DNA ligase activity IEP HCCA
MF GO:0003910 DNA ligase (ATP) activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006606 protein import into nucleus IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
BP GO:0015031 protein transport IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034504 protein localization to nucleus IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051170 import into nucleus IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 615 743
IPR011709 DEAD-box_helicase_OB_fold 853 929
IPR007502 Helicase-assoc_dom 746 782
No external refs found!