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  5. GSVIVT01006503001

GSVIVT01006503001 (PSBB)


Aliases : PSBB

Description : Photosystem II CP47 reaction center protein OS=Phaseolus vulgaris


Gene families : OG0004191 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004191_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01006503001
Cluster HCCA: Cluster_27

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00585p00000100 PSBB,... Photosynthesis.photophosphorylation.photosystem II.PS-II... 0.06 OrthoFinder output from all 47 species
ATCG00680 PSBB photosystem II reaction center protein B 0.09 OrthoFinder output from all 47 species
Adi_g005798 PSBB component *(PsbB/CP47) of PS-II reaction center complex... 0.02 OrthoFinder output from all 47 species
Aev_g08305 PSBB component *(PsbB/CP47) of PS-II reaction center complex... 0.1 OrthoFinder output from all 47 species
Als_g00826 PSBB component *(PsbB/CP47) of PS-II reaction center complex... 0.04 OrthoFinder output from all 47 species
Aob_g02288 PSBB component *(PsbB/CP47) of PS-II reaction center complex... 0.06 OrthoFinder output from all 47 species
Cba_g02603 PSBB component *(PsbB/CP47) of PS-II reaction center complex... 0.04 OrthoFinder output from all 47 species
Ceric.02G015500.1 PSBB, Ceric.02G015500 component *(PsbB/CP47) of PS-II reaction center complex... 0.03 OrthoFinder output from all 47 species
Ceric.05G041400.1 PSBB, Ceric.05G041400 component *(PsbB/CP47) of PS-II reaction center complex... 0.08 OrthoFinder output from all 47 species
Ceric.05G051100.1 PSBB, Ceric.05G051100 component *(PsbB/CP47) of PS-II reaction center complex... 0.06 OrthoFinder output from all 47 species
Ceric.1Z019400.1 PSBB, Ceric.1Z019400 component *(PsbB/CP47) of PS-II reaction center complex... 0.06 OrthoFinder output from all 47 species
Ceric.1Z021200.1 PSBB, Ceric.1Z021200 component *(PsbB/CP47) of PS-II reaction center complex... 0.06 OrthoFinder output from all 47 species
Ceric.1Z162800.1 PSBB, Ceric.1Z162800 component *(PsbB/CP47) of PS-II reaction center complex... 0.08 OrthoFinder output from all 47 species
Ceric.30G038800.1 PSBB, Ceric.30G038800 not classified & original description: pacid=50609266... 0.04 OrthoFinder output from all 47 species
Ceric.38G008000.1 PSBB, Ceric.38G008000 component *(PsbB/CP47) of PS-II reaction center complex... 0.08 OrthoFinder output from all 47 species
Dac_g09466 PSBB component *(PsbB/CP47) of PS-II reaction center complex... 0.02 OrthoFinder output from all 47 species
Dcu_g21021 PSBB component *(PsbB/CP47) of PS-II reaction center complex... 0.05 OrthoFinder output from all 47 species
Dde_g03407 PSBB component *(PsbB/CP47) of PS-II reaction center complex... 0.01 OrthoFinder output from all 47 species
Gb_23567 PSBB component PsbB/CP47 of PS-II reaction center complex 0.09 OrthoFinder output from all 47 species
Gb_27294 PSBB Photosystem II CP47 reaction center protein OS=Cycas... 0.09 OrthoFinder output from all 47 species
LOC_Os06g39708.1 PSBB, LOC_Os06g39708 component PsbB/CP47 of PS-II reaction center complex 0.09 OrthoFinder output from all 47 species
LOC_Os09g04680.1 PSBB, LOC_Os09g04680 Photosystem II CP47 reaction center protein OS=Oryza... 0.08 OrthoFinder output from all 47 species
LOC_Os10g21310.1 PSBB, LOC_Os10g21310 component PsbB/CP47 of PS-II reaction center complex 0.09 OrthoFinder output from all 47 species
LOC_Os12g10600.1 PSBB, LOC_Os12g10600 Photosystem II CP47 reaction center protein OS=Oryza... 0.02 OrthoFinder output from all 47 species
Lfl_g04892 PSBB component *(PsbB/CP47) of PS-II reaction center complex... 0.07 OrthoFinder output from all 47 species
Mpzg01020.1 PSBB component PsbB/CP47 of PS-II reaction center complex 0.05 OrthoFinder output from all 47 species
Msp_g21439 PSBB component *(PsbB/CP47) of PS-II reaction center complex... 0.02 OrthoFinder output from all 47 species
Ore_g02100 PSBB component *(PsbB/CP47) of PS-II reaction center complex... 0.05 OrthoFinder output from all 47 species
Pir_g05119 PSBB component *(PsbB/CP47) of PS-II reaction center complex... 0.05 OrthoFinder output from all 47 species
Pnu_g00696 PSBB component *(PsbB/CP47) of PS-II reaction center complex... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002254 PSBB not classified & original description: CDS=1-408 0.04 OrthoFinder output from all 47 species
Sam_g10281 No alias component *(PsbB/CP47) of PS-II reaction center complex... 0.05 OrthoFinder output from all 47 species
Smo137729 PSBB Photosystem II CP47 reaction center protein OS=Angiopteris evecta 0.07 OrthoFinder output from all 47 species
Solyc00g500024.1.1 PSBB, Solyc00g500024 component PsbB/CP47 of PS-II reaction center complex 0.09 OrthoFinder output from all 47 species
Solyc00g500071.1.1 PSBB, Solyc00g500071 component PsbB/CP47 of PS-II reaction center complex 0.09 OrthoFinder output from all 47 species
Spa_g04296 PSBB component *(PsbB/CP47) of PS-II reaction center complex... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0009523 photosystem II IEA Interproscan
BP GO:0015979 photosynthesis IEA Interproscan
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005739 mitochondrion IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006754 ATP biosynthetic process IEP HCCA
BP GO:0009142 nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009145 purine nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009152 purine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009201 ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009206 purine ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
CC GO:0009522 photosystem I IEP HCCA
CC GO:0009579 thylakoid IEP HCCA
BP GO:0009767 photosynthetic electron transport chain IEP HCCA
BP GO:0009772 photosynthetic electron transport in photosystem II IEP HCCA
MF GO:0015002 obsolete heme-copper terminal oxidase activity IEP HCCA
BP GO:0015986 proton motive force-driven ATP synthesis IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP HCCA
BP GO:0017004 cytochrome complex assembly IEP HCCA
BP GO:0019684 photosynthesis, light reaction IEP HCCA
MF GO:0020037 heme binding IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0022900 electron transport chain IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
MF GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
MF GO:0048038 quinone binding IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR000932 PS_antenna-like 47 156
IPR013082 PSII_cytb559_asu_lum 26 50
No external refs found!