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  5. GSVIVT01002655001

GSVIVT01002655001


No description available


Gene families : OG0004021 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004021_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01002655001
Cluster HCCA: Cluster_66

Target Alias Description ECC score Gene Family Method Actions
Aop_g29274 No alias component *(SF3B2) of splicing factor 3B complex &... 0.03 OrthoFinder output from all 47 species
Cre12.g514450 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.02 OrthoFinder output from all 47 species
Ehy_g17357 No alias component *(SF3B2) of splicing factor 3B complex &... 0.02 OrthoFinder output from all 47 species
LOC_Os02g58090.1 LOC_Os02g58090 component SF3B2 of splicing factor 3B complex 0.04 OrthoFinder output from all 47 species
Mp7g16820.1 No alias component SF3B2 of splicing factor 3B complex 0.04 OrthoFinder output from all 47 species
Msp_g32567 No alias component *(SF3B2) of splicing factor 3B complex &... 0.02 OrthoFinder output from all 47 species
Solyc02g078610.4.1 Solyc02g078610 component SF3B2 of splicing factor 3B complex 0.03 OrthoFinder output from all 47 species
Solyc03g006520.3.1 Solyc03g006520 component SF3B2 of splicing factor 3B complex 0.04 OrthoFinder output from all 47 species
Zm00001e013359_P002 Zm00001e013359 component SF3B2 of splicing factor 3B complex 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000347 THO complex IEP HCCA
CC GO:0000445 THO complex part of transcription export complex IEP HCCA
MF GO:0003729 mRNA binding IEP HCCA
CC GO:0005685 U1 snRNP IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006376 mRNA splice site selection IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
CC GO:0030532 small nuclear ribonucleoprotein complex IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0097525 spliceosomal snRNP complex IEP HCCA
CC GO:0120114 Sm-like protein family complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR006568 PSP_pro-rich 2 43
No external refs found!