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  5. GSVIVT01001111001

GSVIVT01001111001 (NEF1)


Aliases : NEF1

Description : Cell wall.sporopollenin.exine wall formation.NEF1 exine patterning factor


Gene families : OG0004275 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004275_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01001111001

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00016p00233120 NEF1,... Cell wall.sporopollenin.exine wall formation.NEF1 exine... 0.07 OrthoFinder output from all 47 species
AT5G13390 NEF1 no exine formation 1 0.05 OrthoFinder output from all 47 species
Adi_g087227 NEF1 exine patterning factor *(NEF1) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g29070 NEF1 exine patterning factor *(NEF1) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g37910 NEF1 exine patterning factor *(NEF1) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.1Z076600.1 NEF1, Ceric.1Z076600 exine patterning factor *(NEF1) & original description:... 0.05 OrthoFinder output from all 47 species
Cre01.g018050 NEF1 Cell wall.sporopollenin.exine wall formation.NEF1 exine... 0.02 OrthoFinder output from all 47 species
Dcu_g04975 NEF1 exine patterning factor *(NEF1) & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g04037 NEF1 exine patterning factor *(NEF1) & original description: none 0.02 OrthoFinder output from all 47 species
Gb_19950 NEF1 exine patterning factor (NEF1) 0.03 OrthoFinder output from all 47 species
MA_302207g0010 NEF1 exine patterning factor (NEF1) 0.04 OrthoFinder output from all 47 species
Msp_g03573 NEF1 exine patterning factor *(NEF1) & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g08936 NEF1 exine patterning factor *(NEF1) & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g10459 NEF1 exine patterning factor *(NEF1) & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0054.g014202 NEF1 exine patterning factor *(NEF1) & original description:... 0.03 OrthoFinder output from all 47 species
Sam_g13515 No alias exine patterning factor *(NEF1) & original description: none 0.02 OrthoFinder output from all 47 species
Smo92814 NEF1 Cell wall.sporopollenin.exine wall formation.NEF1 exine... 0.03 OrthoFinder output from all 47 species
Solyc11g033282.1.1 NEF1, Solyc11g033282 exine patterning factor (NEF1) 0.03 OrthoFinder output from all 47 species
Spa_g15321 NEF1 exine patterning factor *(NEF1) & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006605 protein targeting IEP HCCA
BP GO:0006612 protein targeting to membrane IEP HCCA
BP GO:0006613 cotranslational protein targeting to membrane IEP HCCA
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008312 7S RNA binding IEP HCCA
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP HCCA
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP HCCA
CC GO:0017119 Golgi transport complex IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030127 COPII vesicle coat IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0045047 protein targeting to ER IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
CC GO:0048500 signal recognition particle IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0051668 localization within membrane IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0070972 protein localization to endoplasmic reticulum IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP HCCA
BP GO:0072657 protein localization to membrane IEP HCCA
BP GO:0090150 establishment of protein localization to membrane IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA

No InterPro domains available for this sequence

No external refs found!