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Description : RNA processing.RNA decay.deadenylation-dependent mechanism.mRNA deadenylation.CCR4-NOT complex.NOT1 component
Gene families : OG0002046 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002046_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: GSVIVT01000874001 | |
| Cluster | HCCA: Cluster_95 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00106p00133350 | evm_27.TU.AmTr_v1... | RNA processing.RNA decay.deadenylation-dependent... | 0.1 | OrthoFinder output from all 47 species | |
| AT1G02080 | No alias | transcription regulators | 0.17 | OrthoFinder output from all 47 species | |
| Adi_g055874 | No alias | scaffold component *(NOT1) of mRNA deadenylation... | 0.09 | OrthoFinder output from all 47 species | |
| Ala_g12815 | No alias | scaffold component *(NOT1) of mRNA deadenylation... | 0.06 | OrthoFinder output from all 47 species | |
| Als_g17486 | No alias | scaffold component *(NOT1) of mRNA deadenylation... | 0.11 | OrthoFinder output from all 47 species | |
| Aob_g22134 | No alias | scaffold component *(NOT1) of mRNA deadenylation... | 0.05 | OrthoFinder output from all 47 species | |
| Aop_g06241 | No alias | scaffold component *(NOT1) of mRNA deadenylation... | 0.07 | OrthoFinder output from all 47 species | |
| Azfi_s0065.g035985 | No alias | scaffold component *(NOT1) of mRNA deadenylation... | 0.06 | OrthoFinder output from all 47 species | |
| Cba_g12926 | No alias | scaffold component *(NOT1) of mRNA deadenylation... | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.34G056500.1 | Ceric.34G056500 | scaffold component *(NOT1) of mRNA deadenylation... | 0.07 | OrthoFinder output from all 47 species | |
| Cpa|evm.model.tig00000767.19 | No alias | RNA processing.RNA decay.deadenylation-dependent... | 0.03 | OrthoFinder output from all 47 species | |
| Cre14.g632950 | No alias | RNA processing.RNA decay.deadenylation-dependent... | 0.02 | OrthoFinder output from all 47 species | |
| Dac_g28625 | No alias | scaffold component *(NOT1) of mRNA deadenylation... | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g02066 | No alias | scaffold component *(NOT1) of mRNA deadenylation... | 0.07 | OrthoFinder output from all 47 species | |
| Dde_g01777 | No alias | scaffold component *(NOT1) of mRNA deadenylation... | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g17663 | No alias | scaffold component *(NOT1) of mRNA deadenylation... | 0.03 | OrthoFinder output from all 47 species | |
| Gb_12251 | No alias | component NOT1 of mRNA deadenylation CCR4-NOT complex | 0.06 | OrthoFinder output from all 47 species | |
| LOC_Os10g40780.1 | LOC_Os10g40780 | component NOT1 of mRNA deadenylation CCR4-NOT complex | 0.07 | OrthoFinder output from all 47 species | |
| Len_g12091 | No alias | scaffold component *(NOT1) of mRNA deadenylation... | 0.07 | OrthoFinder output from all 47 species | |
| Lfl_g10188 | No alias | scaffold component *(NOT1) of mRNA deadenylation... | 0.05 | OrthoFinder output from all 47 species | |
| MA_100304g0010 | No alias | no hits & (original description: none) | 0.08 | OrthoFinder output from all 47 species | |
| MA_1121588g0010 | No alias | no hits & (original description: none) | 0.03 | OrthoFinder output from all 47 species | |
| MA_42843g0010 | No alias | component NOT1 of mRNA deadenylation CCR4-NOT complex | 0.15 | OrthoFinder output from all 47 species | |
| Mp3g11860.1 | No alias | component NOT1 of mRNA deadenylation CCR4-NOT complex | 0.08 | OrthoFinder output from all 47 species | |
| Ore_g16116 | No alias | scaffold component *(NOT1) of mRNA deadenylation... | 0.06 | OrthoFinder output from all 47 species | |
| Pir_g16782 | No alias | scaffold component *(NOT1) of mRNA deadenylation... | 0.05 | OrthoFinder output from all 47 species | |
| Ppi_g22265 | No alias | scaffold component *(NOT1) of mRNA deadenylation... | 0.04 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0261.g026893 | No alias | scaffold component *(NOT1) of mRNA deadenylation... | 0.08 | OrthoFinder output from all 47 species | |
| Sam_g40588 | No alias | scaffold component *(NOT1) of mRNA deadenylation... | 0.05 | OrthoFinder output from all 47 species | |
| Smo440060 | No alias | RNA processing.RNA decay.deadenylation-dependent... | 0.1 | OrthoFinder output from all 47 species | |
| Solyc01g090780.3.1 | Solyc01g090780 | component NOT1 of mRNA deadenylation CCR4-NOT complex | 0.11 | OrthoFinder output from all 47 species | |
| Tin_g16815 | No alias | scaffold component *(NOT1) of mRNA deadenylation... | 0.07 | OrthoFinder output from all 47 species | |
| Zm00001e000031_P001 | Zm00001e000031 | component NOT1 of mRNA deadenylation CCR4-NOT complex | 0.08 | OrthoFinder output from all 47 species | |
| Zm00001e039114_P001 | Zm00001e039114 | component NOT1 of mRNA deadenylation CCR4-NOT complex | 0.03 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000184 | nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | IEP | HCCA |
| BP | GO:0000956 | nuclear-transcribed mRNA catabolic process | IEP | HCCA |
| MF | GO:0004386 | helicase activity | IEP | HCCA |
| MF | GO:0004721 | phosphoprotein phosphatase activity | IEP | HCCA |
| MF | GO:0005524 | ATP binding | IEP | HCCA |
| CC | GO:0005737 | cytoplasm | IEP | HCCA |
| BP | GO:0006401 | RNA catabolic process | IEP | HCCA |
| BP | GO:0006402 | mRNA catabolic process | IEP | HCCA |
| MF | GO:0008138 | protein tyrosine/serine/threonine phosphatase activity | IEP | HCCA |
| BP | GO:0009057 | macromolecule catabolic process | IEP | HCCA |
| BP | GO:0009892 | negative regulation of metabolic process | IEP | HCCA |
| BP | GO:0010605 | negative regulation of macromolecule metabolic process | IEP | HCCA |
| BP | GO:0010629 | negative regulation of gene expression | IEP | HCCA |
| BP | GO:0016071 | mRNA metabolic process | IEP | HCCA |
| BP | GO:0016311 | dephosphorylation | IEP | HCCA |
| MF | GO:0016791 | phosphatase activity | IEP | HCCA |
| BP | GO:0019439 | aromatic compound catabolic process | IEP | HCCA |
| BP | GO:0034655 | nucleobase-containing compound catabolic process | IEP | HCCA |
| MF | GO:0042578 | phosphoric ester hydrolase activity | IEP | HCCA |
| BP | GO:0044265 | cellular macromolecule catabolic process | IEP | HCCA |
| BP | GO:0044270 | cellular nitrogen compound catabolic process | IEP | HCCA |
| BP | GO:0046700 | heterocycle catabolic process | IEP | HCCA |
| BP | GO:0048519 | negative regulation of biological process | IEP | HCCA |
| BP | GO:1901361 | organic cyclic compound catabolic process | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR007196 | CCR4-Not_Not1_C | 567 | 937 |
| No external refs found! |
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