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  5. Solyc12g088230.3.1

Solyc12g088230.3.1 (RXW8, Solyc12g088230)


Aliases : RXW8, Solyc12g088230

Description : calcium-permeable channel (OSCA)


Gene families : OG0000264 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000264_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc12g088230.3.1

Target Alias Description ECC score Gene Family Method Actions
Als_g27992 ERD4 calcium-permeable channel *(OSCA) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.1Z193300.1 Ceric.1Z193300 not classified & original description: pacid=50634950... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000655.11 No alias No description available 0.01 OrthoFinder output from all 47 species
Ehy_g15661 HYP1, ATHYP1 calcium-permeable channel *(OSCA) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01012666001 No alias Solute transport.channels.OSCA calcium-permeable channel 0.02 OrthoFinder output from all 47 species
LOC_Os12g43720.1 RXW8, LOC_Os12g43720 calcium-permeable channel (OSCA) 0.03 OrthoFinder output from all 47 species
Smo41460 ERD4 Solute transport.channels.OSCA calcium-permeable channel 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0016020 membrane IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
BP GO:0006643 membrane lipid metabolic process IEP HCCA
BP GO:0006665 sphingolipid metabolic process IEP HCCA
BP GO:0006672 ceramide metabolic process IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP HCCA
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR003864 CSC1/OSCA1-like_7TM 350 615
IPR027815 CSC1/OSCA1-like_cyt 187 339
IPR032880 Csc1/OSCA1-like_N 6 165
No external refs found!