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  5. Solyc12g056080.2.1

Solyc12g056080.2.1 (Solyc12g056080)


Aliases : Solyc12g056080

Description : component CRN/MAC10 of non-snRNP MOS4-associated complex


Gene families : OG0004678 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004678_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc12g056080.2.1
Cluster HCCA: Cluster_74

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00012p00234420 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.spliceosome-associated... 0.06 OrthoFinder output from all 47 species
AT5G41770 No alias crooked neck protein, putative / cell cycle protein, putative 0.13 OrthoFinder output from all 47 species
Aev_g03298 No alias component *(CRN/MAC10) of non-snRNP MOS4-associated... 0.02 OrthoFinder output from all 47 species
Ala_g08121 No alias component *(CRN/MAC10) of non-snRNP MOS4-associated... 0.04 OrthoFinder output from all 47 species
Als_g21795 No alias component *(CRN/MAC10) of non-snRNP MOS4-associated... 0.03 OrthoFinder output from all 47 species
Aop_g04249 No alias component *(CRN/MAC10) of non-snRNP MOS4-associated... 0.03 OrthoFinder output from all 47 species
Ceric.03G087800.1 Ceric.03G087800 component *(CRN/MAC10) of non-snRNP MOS4-associated... 0.09 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000128.3 No alias RNA processing.RNA splicing.spliceosome-associated... 0.04 OrthoFinder output from all 47 species
Cre14.g621000 No alias RNA processing.RNA splicing.spliceosome-associated... 0.07 OrthoFinder output from all 47 species
Dac_g03828 No alias component *(CRN/MAC10) of non-snRNP MOS4-associated... 0.02 OrthoFinder output from all 47 species
GSVIVT01019497001 No alias RNA processing.RNA splicing.spliceosome-associated... 0.03 OrthoFinder output from all 47 species
Gb_24869 No alias component CRN/MAC10 of non-snRNP MOS4-associated complex 0.06 OrthoFinder output from all 47 species
LOC_Os05g22260.1 LOC_Os05g22260 component CRN/MAC10 of non-snRNP MOS4-associated complex 0.1 OrthoFinder output from all 47 species
MA_218488g0010 No alias component CRN/MAC10 of non-snRNP MOS4-associated complex 0.01 OrthoFinder output from all 47 species
Mp6g08750.1 No alias component CRN/MAC10 of non-snRNP MOS4-associated complex 0.03 OrthoFinder output from all 47 species
Msp_g08808 No alias component *(CRN/MAC10) of non-snRNP MOS4-associated... 0.03 OrthoFinder output from all 47 species
Pir_g60627 No alias component *(CRN/MAC10) of non-snRNP MOS4-associated... 0.03 OrthoFinder output from all 47 species
Sam_g12026 No alias component *(CRN/MAC10) of non-snRNP MOS4-associated... 0.07 OrthoFinder output from all 47 species
Smo442275 No alias RNA processing.RNA splicing.spliceosome-associated... 0.03 OrthoFinder output from all 47 species
Zm00001e005158_P001 Zm00001e005158 component CRN/MAC10 of non-snRNP MOS4-associated complex 0.11 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006396 RNA processing IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006476 protein deacetylation IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016575 histone deacetylation IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
BP GO:0031047 RNA-mediated gene silencing IEP HCCA
MF GO:0031491 nucleosome binding IEP HCCA
BP GO:0035601 protein deacylation IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0098732 macromolecule deacylation IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR003107 HAT 206 234
No external refs found!