1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc12g049030.1.1

Solyc12g049030.1.1 (FAD2, Solyc12g049030)


Aliases : FAD2, Solyc12g049030

Description : omega-3/omega-6 fatty acid desaturase


Gene families : OG0001837 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001837_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc12g049030.1.1
Cluster HCCA: Cluster_55

Target Alias Description ECC score Gene Family Method Actions
Aop_g07874 FAD2 delta-12/delta-15 fatty acid desaturase & original... 0.03 OrthoFinder output from all 47 species
Ehy_g22864 FAD2 delta-12/delta-15 fatty acid desaturase & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01025364001 FAD2 Lipid metabolism.fatty acid synthesis.fatty acid... 0.04 OrthoFinder output from all 47 species
LOC_Os02g48560.1 FAD2, LOC_Os02g48560 omega-3/omega-6 fatty acid desaturase 0.04 OrthoFinder output from all 47 species
LOC_Os07g23410.1 FAD2, LOC_Os07g23410 omega-3/omega-6 fatty acid desaturase 0.06 OrthoFinder output from all 47 species
MA_31867g0010 FAD2 omega-3/omega-6 fatty acid desaturase 0.02 OrthoFinder output from all 47 species
Msp_g27488 FAD2 delta-12/delta-15 fatty acid desaturase & original... 0.04 OrthoFinder output from all 47 species
Pnu_g32690 FAD2 delta-12/delta-15 fatty acid desaturase & original... 0.03 OrthoFinder output from all 47 species
Ppi_g08128 FAD2 delta-12/delta-15 fatty acid desaturase & original... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0068.g016352 FAD2 delta-12/delta-15 fatty acid desaturase & original... 0.02 OrthoFinder output from all 47 species
Solyc04g040120.1.1 FAD2, Solyc04g040120 omega-3/omega-6 fatty acid desaturase 0.07 OrthoFinder output from all 47 species
Solyc12g045037.1.1 FAD2, Solyc12g045037 omega-3/omega-6 fatty acid desaturase 0.03 OrthoFinder output from all 47 species
Solyc12g100230.1.1 FAD2, Solyc12g100230 omega-3/omega-6 fatty acid desaturase 0.05 OrthoFinder output from all 47 species
Zm00001e039637_P001 FAD2, Zm00001e039637 omega-3/omega-6 fatty acid desaturase 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006629 lipid metabolic process IEA Interproscan
MF GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water IEA Interproscan
BP GO:0055114 obsolete oxidation-reduction process IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
InterPro domains Description Start Stop
IPR005804 FA_desaturase_dom 85 347
IPR021863 FAS_N 23 64
No external refs found!