Aliases : emb1473, Solyc12g014390
Description : component psRPL13 of large ribosomal subunit proteome
Gene families : OG0006254 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006254_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00046p00228230 | emb1473,... | Protein biosynthesis.organelle translation... | 0.08 | OrthoFinder output from all 47 species | |
AT1G78630 | emb1473 | Ribosomal protein L13 family protein | 0.12 | OrthoFinder output from all 47 species | |
Aev_g00534 | emb1473 | component *(uL13c) of large plastid ribosomal-subunit... | 0.07 | OrthoFinder output from all 47 species | |
Ala_g09807 | emb1473 | component *(uL13c) of large plastid ribosomal-subunit... | 0.1 | OrthoFinder output from all 47 species | |
Als_g17613 | emb1473 | component *(uL13c) of large plastid ribosomal-subunit... | 0.13 | OrthoFinder output from all 47 species | |
Aob_g06248 | emb1473 | component *(uL13c) of large plastid ribosomal-subunit... | 0.05 | OrthoFinder output from all 47 species | |
Aop_g00301 | emb1473 | component *(uL13c) of large plastid ribosomal-subunit... | 0.09 | OrthoFinder output from all 47 species | |
Azfi_s0224.g058887 | emb1473 | component *(uL13c) of large plastid ribosomal-subunit... | 0.12 | OrthoFinder output from all 47 species | |
Ceric.14G072800.1 | emb1473, Ceric.14G072800 | component *(uL13c) of large plastid ribosomal-subunit... | 0.2 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00020912.24 | emb1473 | 50S ribosomal protein L13, chloroplastic OS=Arabidopsis thaliana | 0.06 | OrthoFinder output from all 47 species | |
Cre06.g264350 | emb1473 | Protein biosynthesis.organelle translation... | 0.16 | OrthoFinder output from all 47 species | |
Dac_g17592 | emb1473 | component *(uL13c) of large plastid ribosomal-subunit... | 0.06 | OrthoFinder output from all 47 species | |
Dcu_g00726 | emb1473 | component *(uL13c) of large plastid ribosomal-subunit... | 0.03 | OrthoFinder output from all 47 species | |
Dde_g01255 | emb1473 | component *(uL13c) of large plastid ribosomal-subunit... | 0.06 | OrthoFinder output from all 47 species | |
Ehy_g04479 | emb1473 | component *(uL13c) of large plastid ribosomal-subunit... | 0.05 | OrthoFinder output from all 47 species | |
GSVIVT01014101001 | emb1473 | Protein biosynthesis.organelle translation... | 0.15 | OrthoFinder output from all 47 species | |
Gb_28095 | emb1473 | component psRPL13 of large ribosomal subunit proteome | 0.12 | OrthoFinder output from all 47 species | |
LOC_Os01g54540.1 | emb1473, LOC_Os01g54540 | component psRPL13 of large ribosomal subunit proteome | 0.14 | OrthoFinder output from all 47 species | |
Len_g01005 | emb1473 | component *(uL13c) of large plastid ribosomal-subunit... | 0.13 | OrthoFinder output from all 47 species | |
Lfl_g03832 | emb1473 | component *(uL13c) of large plastid ribosomal-subunit... | 0.13 | OrthoFinder output from all 47 species | |
MA_10433400g0010 | emb1473 | component psRPL13 of large ribosomal subunit proteome | 0.12 | OrthoFinder output from all 47 species | |
MA_27171g0010 | No alias | no hits & (original description: none) | 0.1 | OrthoFinder output from all 47 species | |
Mp3g07030.1 | emb1473 | component psRPL13 of large ribosomal subunit proteome | 0.24 | OrthoFinder output from all 47 species | |
Msp_g09623 | emb1473 | component *(uL13c) of large plastid ribosomal-subunit... | 0.08 | OrthoFinder output from all 47 species | |
Nbi_g04003 | emb1473 | component *(uL13c) of large plastid ribosomal-subunit... | 0.05 | OrthoFinder output from all 47 species | |
Ore_g11308 | emb1473 | component *(uL13c) of large plastid ribosomal-subunit... | 0.07 | OrthoFinder output from all 47 species | |
Pnu_g03358 | emb1473 | component *(uL13c) of large plastid ribosomal-subunit... | 0.05 | OrthoFinder output from all 47 species | |
Pp3c24_18330V3.1 | emb1473, Pp3c24_18330 | Ribosomal protein L13 family protein | 0.02 | OrthoFinder output from all 47 species | |
Ppi_g11794 | emb1473 | component *(uL13c) of large plastid ribosomal-subunit... | 0.09 | OrthoFinder output from all 47 species | |
Sam_g16893 | No alias | component *(uL13c) of large plastid ribosomal-subunit... | 0.09 | OrthoFinder output from all 47 species | |
Smo7665 | emb1473 | Protein biosynthesis.organelle translation... | 0.04 | OrthoFinder output from all 47 species | |
Spa_g21366 | emb1473 | component *(uL13c) of large plastid ribosomal-subunit... | 0.09 | OrthoFinder output from all 47 species | |
Tin_g09876 | emb1473 | component *(uL13c) of large plastid ribosomal-subunit... | 0.09 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003735 | structural constituent of ribosome | IEA | Interproscan |
CC | GO:0005840 | ribosome | IEA | Interproscan |
BP | GO:0006412 | translation | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003755 | peptidyl-prolyl cis-trans isomerase activity | IEP | HCCA |
MF | GO:0003824 | catalytic activity | IEP | HCCA |
MF | GO:0004751 | ribose-5-phosphate isomerase activity | IEP | HCCA |
MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | HCCA |
MF | GO:0004827 | proline-tRNA ligase activity | IEP | HCCA |
CC | GO:0005737 | cytoplasm | IEP | HCCA |
BP | GO:0006066 | alcohol metabolic process | IEP | HCCA |
BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | HCCA |
BP | GO:0006433 | prolyl-tRNA aminoacylation | IEP | HCCA |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
BP | GO:0006729 | tetrahydrobiopterin biosynthetic process | IEP | HCCA |
BP | GO:0006778 | porphyrin-containing compound metabolic process | IEP | HCCA |
BP | GO:0006779 | porphyrin-containing compound biosynthetic process | IEP | HCCA |
MF | GO:0008124 | 4-alpha-hydroxytetrahydrobiopterin dehydratase activity | IEP | HCCA |
MF | GO:0008171 | O-methyltransferase activity | IEP | HCCA |
MF | GO:0008757 | S-adenosylmethionine-dependent methyltransferase activity | IEP | HCCA |
BP | GO:0009052 | pentose-phosphate shunt, non-oxidative branch | IEP | HCCA |
CC | GO:0009521 | photosystem | IEP | HCCA |
CC | GO:0009523 | photosystem II | IEP | HCCA |
CC | GO:0009654 | photosystem II oxygen evolving complex | IEP | HCCA |
BP | GO:0015994 | chlorophyll metabolic process | IEP | HCCA |
BP | GO:0015995 | chlorophyll biosynthetic process | IEP | HCCA |
MF | GO:0016765 | transferase activity, transferring alkyl or aryl (other than methyl) groups | IEP | HCCA |
MF | GO:0016835 | carbon-oxygen lyase activity | IEP | HCCA |
MF | GO:0016836 | hydro-lyase activity | IEP | HCCA |
MF | GO:0016853 | isomerase activity | IEP | HCCA |
MF | GO:0016859 | cis-trans isomerase activity | IEP | HCCA |
MF | GO:0016860 | intramolecular oxidoreductase activity | IEP | HCCA |
MF | GO:0016861 | intramolecular oxidoreductase activity, interconverting aldoses and ketoses | IEP | HCCA |
MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | HCCA |
BP | GO:0018130 | heterocycle biosynthetic process | IEP | HCCA |
BP | GO:0019438 | aromatic compound biosynthetic process | IEP | HCCA |
BP | GO:0019751 | polyol metabolic process | IEP | HCCA |
BP | GO:0033013 | tetrapyrrole metabolic process | IEP | HCCA |
BP | GO:0033014 | tetrapyrrole biosynthetic process | IEP | HCCA |
BP | GO:0034311 | diol metabolic process | IEP | HCCA |
BP | GO:0034312 | diol biosynthetic process | IEP | HCCA |
BP | GO:0042440 | pigment metabolic process | IEP | HCCA |
BP | GO:0042558 | pteridine-containing compound metabolic process | IEP | HCCA |
BP | GO:0042559 | pteridine-containing compound biosynthetic process | IEP | HCCA |
BP | GO:0043038 | amino acid activation | IEP | HCCA |
BP | GO:0043039 | tRNA aminoacylation | IEP | HCCA |
BP | GO:0044281 | small molecule metabolic process | IEP | HCCA |
BP | GO:0046146 | tetrahydrobiopterin metabolic process | IEP | HCCA |
BP | GO:0046148 | pigment biosynthetic process | IEP | HCCA |
BP | GO:0046165 | alcohol biosynthetic process | IEP | HCCA |
BP | GO:0046173 | polyol biosynthetic process | IEP | HCCA |
MF | GO:0046406 | magnesium protoporphyrin IX methyltransferase activity | IEP | HCCA |
BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
MF | GO:0051536 | iron-sulfur cluster binding | IEP | HCCA |
MF | GO:0051540 | metal cluster binding | IEP | HCCA |
MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | HCCA |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
BP | GO:1901362 | organic cyclic compound biosynthetic process | IEP | HCCA |
BP | GO:1901615 | organic hydroxy compound metabolic process | IEP | HCCA |
BP | GO:1901617 | organic hydroxy compound biosynthetic process | IEP | HCCA |
CC | GO:1990204 | oxidoreductase complex | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR005822 | Ribosomal_L13 | 93 | 215 |
No external refs found! |