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  5. Solyc12g013790.3.1

Solyc12g013790.3.1 (Solyc12g013790)


Aliases : Solyc12g013790

Description : no hits & (original description: none)


Gene families : OG0006929 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006929_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc12g013790.3.1
Cluster HCCA: Cluster_74

Target Alias Description ECC score Gene Family Method Actions
AT5G53800 No alias unknown protein; Has 30201 Blast hits to 17322 proteins... 0.12 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001093.5 No alias No description available 0.05 OrthoFinder output from all 47 species
Cre03.g176050 No alias No description available 0.02 OrthoFinder output from all 47 species
LOC_Os04g44800.1 LOC_Os04g44800 no hits & (original description: none) 0.1 OrthoFinder output from all 47 species
MA_9243g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Pnu_g32661 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g08931 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e007435_P001 Zm00001e007435 no hits & (original description: none) 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000350 generation of catalytic spliceosome for second transesterification step IEP HCCA
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA

No InterPro domains available for this sequence

No external refs found!