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  5. Solyc11g065380.2.1

Solyc11g065380.2.1 (Solyc11g065380)


Aliases : Solyc11g065380

Description : no hits & (original description: none)


Gene families : OG0002041 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002041_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc11g065380.2.1
Cluster HCCA: Cluster_105

Target Alias Description ECC score Gene Family Method Actions
Ceric.31G028600.1 Ceric.31G028600 not classified & original description: pacid=50574921... 0.04 OrthoFinder output from all 47 species
GSVIVT01034354001 No alias No description available 0.06 OrthoFinder output from all 47 species
LOC_Os08g39880.1 LOC_Os08g39880 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Nbi_g21304 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g09225 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e003545_P001 Zm00001e003545 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
CC GO:0005681 spliceosomal complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR025239 DUF4187 191 244
IPR000467 G_patch_dom 75 116
No external refs found!