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  5. Solyc11g013440.2.1

Solyc11g013440.2.1 (EIF2, AteIF3f, eIF3F,...)


Aliases : EIF2, AteIF3f, eIF3F, Solyc11g013440

Description : component eIF3f of eIF3 mRNA-to-PIC binding complex


Gene families : OG0004531 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004531_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc11g013440.2.1
Cluster HCCA: Cluster_19

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00077p00121720 EIF2, AteIF3f,... Protein biosynthesis.translation... 0.02 OrthoFinder output from all 47 species
AT2G39990 EIF2, AteIF3f, eIF3F eukaryotic translation initiation factor 2 0.07 OrthoFinder output from all 47 species
Aop_g13170 EIF2, AteIF3f, eIF3F component *(eIF3f) of eIF3 mRNA-to-PIC binding complex &... 0.02 OrthoFinder output from all 47 species
Azfi_s0754.g085338 EIF2, AteIF3f, eIF3F component *(eIF3f) of eIF3 mRNA-to-PIC binding complex &... 0.07 OrthoFinder output from all 47 species
Ceric.19G025600.1 EIF2, AteIF3f,... component *(eIF3f) of eIF3 mRNA-to-PIC binding complex &... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001355.7 EIF2, AteIF3f, eIF3F Protein biosynthesis.translation... 0.04 OrthoFinder output from all 47 species
Cre16.g654500 EIF2, AteIF3f, eIF3F Protein biosynthesis.translation... 0.1 OrthoFinder output from all 47 species
Dcu_g43958 EIF2, AteIF3f, eIF3F component *(eIF3f) of eIF3 mRNA-to-PIC binding complex &... 0.02 OrthoFinder output from all 47 species
Ehy_g19884 EIF2, AteIF3f, eIF3F component *(eIF3f) of eIF3 mRNA-to-PIC binding complex &... 0.02 OrthoFinder output from all 47 species
Gb_36251 EIF2, AteIF3f, eIF3F component eIF3f of eIF3 mRNA-to-PIC binding complex 0.05 OrthoFinder output from all 47 species
LOC_Os05g01450.1 EIF2, AteIF3f,... component eIF3f of eIF3 mRNA-to-PIC binding complex 0.09 OrthoFinder output from all 47 species
MA_13553g0010 EIF2, AteIF3f, eIF3F component eIF3f of eIF3 mRNA-to-PIC binding complex 0.03 OrthoFinder output from all 47 species
Mp5g18020.1 EIF2, AteIF3f, eIF3F component eIF3f of eIF3 mRNA-to-PIC binding complex 0.13 OrthoFinder output from all 47 species
Nbi_g04161 EIF2, AteIF3f, eIF3F component *(eIF3f) of eIF3 mRNA-to-PIC binding complex &... 0.09 OrthoFinder output from all 47 species
Sam_g52178 No alias component *(eIF3f) of eIF3 mRNA-to-PIC binding complex &... 0.03 OrthoFinder output from all 47 species
Spa_g09311 EIF2, AteIF3f, eIF3F component *(eIF3f) of eIF3 mRNA-to-PIC binding complex &... 0.06 OrthoFinder output from all 47 species
Zm00001e027674_P001 EIF2, AteIF3f,... component eIF3f of eIF3 mRNA-to-PIC binding complex 0.04 OrthoFinder output from all 47 species
Zm00001e029699_P001 EIF2, AteIF3f,... component eIF3f of eIF3 mRNA-to-PIC binding complex 0.09 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005744 TIM23 mitochondrial import inner membrane translocase complex IEP HCCA
CC GO:0005840 ribosome IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006839 mitochondrial transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008097 5S rRNA binding IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008175 tRNA methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0030150 protein import into mitochondrial matrix IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0044743 protein transmembrane import into intracellular organelle IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0065002 intracellular protein transmembrane transport IEP HCCA
BP GO:0070585 protein localization to mitochondrion IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0071806 protein transmembrane transport IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0072655 establishment of protein localization to mitochondrion IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0098798 mitochondrial protein-containing complex IEP HCCA
CC GO:0098800 inner mitochondrial membrane protein complex IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
BP GO:1990542 mitochondrial transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR000555 JAMM/MPN+_dom 19 117
IPR024969 Rpn11/EIF3F_C 172 278
No external refs found!