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  5. Solyc11g012820.2.1

Solyc11g012820.2.1 (EMB1968, RFC4, Solyc11g012820)


Aliases : EMB1968, RFC4, Solyc11g012820

Description : component RFC4 of PCNA sliding clamp loader complex


Gene families : OG0006776 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006776_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc11g012820.2.1

Target Alias Description ECC score Gene Family Method Actions
LOC_Os12g07720.1 EMB1968, RFC4,... component RFC4 of PCNA sliding clamp loader complex 0.03 OrthoFinder output from all 47 species
MA_540763g0010 EMB1968, RFC4 component RFC4 of PCNA sliding clamp loader complex 0.03 OrthoFinder output from all 47 species
Smo123078 EMB1968, RFC4 Cell cycle.interphase.DNA... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0004609 phosphatidylserine decarboxylase activity IEP HCCA
CC GO:0005759 mitochondrial matrix IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006644 phospholipid metabolic process IEP HCCA
BP GO:0008654 phospholipid biosynthetic process IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
CC GO:0031974 membrane-enclosed lumen IEP HCCA
CC GO:0043233 organelle lumen IEP HCCA
CC GO:0070013 intracellular organelle lumen IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
MF GO:0098519 obsolete nucleotide phosphatase activity, acting on free nucleotides IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR013748 Rep_factorC_C 240 324
IPR003959 ATPase_AAA_core 45 171
No external refs found!