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  5. Solyc11g006320.2.1

Solyc11g006320.2.1 (UBP12, Solyc11g006320)


Aliases : UBP12, Solyc11g006320

Description : ubiquitin protease (USP7). deubiquitinase (UBP12-13)


Gene families : OG0001048 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001048_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc11g006320.2.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00140970 UBP13,... Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AT3G11910 UBP13 ubiquitin-specific protease 13 0.07 OrthoFinder output from all 47 species
AT5G06600 UBP12 ubiquitin-specific protease 12 0.03 OrthoFinder output from all 47 species
Adi_g109500 UBP12 deubiquitinase *(UBP12-13) & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g16236 UBP12 deubiquitinase *(UBP12-13) & original description: none 0.07 OrthoFinder output from all 47 species
Ala_g19646 UBP13 deubiquitinase *(UBP12-13) & original description: none 0.04 OrthoFinder output from all 47 species
Als_g05134 UBP13 deubiquitinase *(UBP12-13) & original description: none 0.06 OrthoFinder output from all 47 species
Als_g11910 UBP12 deubiquitinase *(UBP12-13) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g29323 UBP12 deubiquitinase *(UBP12-13) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g20270 UBP12 deubiquitinase *(UBP12-13) & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g12303 UBP12 deubiquitinase *(UBP12-13) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene19497.t1 UBP12, Aspi01Gene19497 deubiquitinase *(UBP12-13) & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0018.g014866 UBP12 deubiquitinase *(UBP12-13) & original description: CDS=40-3402 0.04 OrthoFinder output from all 47 species
Cba_g17070 UBP12 deubiquitinase *(UBP12-13) & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g76845 UBP12 deubiquitinase *(UBP12-13) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.04G077200.1 UBP13, Ceric.04G077200 deubiquitinase *(UBP12-13) & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.13G025300.1 UBP13, Ceric.13G025300 deubiquitinase *(UBP12-13) & original description:... 0.06 OrthoFinder output from all 47 species
Ceric.14G040100.1 UBP12, Ceric.14G040100 deubiquitinase *(UBP12-13) & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.24G037500.1 UBP12, Ceric.24G037500 deubiquitinase *(UBP12-13) & original description:... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000217.46 UBP12 Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021350.30 UBP12 Protein degradation.peptidase families.cysteine-type... 0.02 OrthoFinder output from all 47 species
Dcu_g06495 UBP12 deubiquitinase *(UBP12-13) & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g08947 UBP12 deubiquitinase *(UBP12-13) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g46962 UBP13 deubiquitinase *(UBP12-13) & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g50110 UBP12 deubiquitinase *(UBP12-13) & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g25656 UBP12 deubiquitinase *(UBP12-13) & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01022498001 UBP12 Protein degradation.peptidase families.cysteine-type... 0.09 OrthoFinder output from all 47 species
GSVIVT01034603001 UBP12 Protein degradation.peptidase families.cysteine-type... 0.06 OrthoFinder output from all 47 species
Gb_02820 UBP12 ubiquitin protease (USP7). deubiquitinase (UBP12-13) 0.04 OrthoFinder output from all 47 species
Gb_04866 UBP13 ubiquitin protease (USP7). deubiquitinase (UBP12-13) 0.03 OrthoFinder output from all 47 species
LOC_Os01g56490.1 UBP13, LOC_Os01g56490 ubiquitin protease (USP7). deubiquitinase (UBP12-13) 0.04 OrthoFinder output from all 47 species
LOC_Os07g06950.1 UBP12, LOC_Os07g06950 ubiquitin protease (USP7). deubiquitinase (UBP12-13) 0.05 OrthoFinder output from all 47 species
LOC_Os11g36470.1 UBP13, LOC_Os11g36470 ubiquitin protease (USP7). deubiquitinase (UBP12-13) 0.03 OrthoFinder output from all 47 species
LOC_Os12g30540.1 UBP12, LOC_Os12g30540 ubiquitin protease (USP7). deubiquitinase (UBP12-13) 0.04 OrthoFinder output from all 47 species
Len_g10766 UBP13 deubiquitinase *(UBP12-13) & original description: none 0.03 OrthoFinder output from all 47 species
Len_g23299 UBP13 deubiquitinase *(UBP12-13) & original description: none 0.06 OrthoFinder output from all 47 species
Lfl_g05026 UBP13 deubiquitinase *(UBP12-13) & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g40373 UBP12 deubiquitinase *(UBP12-13) & original description: none 0.03 OrthoFinder output from all 47 species
MA_10426331g0010 UBP12 ubiquitin protease (USP7). deubiquitinase (UBP12-13) 0.03 OrthoFinder output from all 47 species
MA_10427483g0010 UBP12 ubiquitin protease (USP7). deubiquitinase (UBP12-13) 0.04 OrthoFinder output from all 47 species
MA_10427483g0020 UBP13 deubiquitinase (UBP12-13) 0.02 OrthoFinder output from all 47 species
MA_10428769g0010 UBP12 ubiquitin protease (USP7). deubiquitinase (UBP12-13) 0.07 OrthoFinder output from all 47 species
MA_32639g0010 UBP12 ubiquitin protease (USP7) 0.03 OrthoFinder output from all 47 species
MA_75085g0010 UBP13 deubiquitinase (UBP12-13) 0.04 OrthoFinder output from all 47 species
Mp3g15430.1 UBP12 ubiquitin protease (USP7). deubiquitinase (UBP12-13) 0.04 OrthoFinder output from all 47 species
Msp_g15171 UBP12 deubiquitinase *(UBP12-13) & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g28804 UBP12 deubiquitinase *(UBP12-13) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g40484 UBP12 deubiquitinase *(UBP12-13) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g16380 UBP13 deubiquitinase *(UBP12-13) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g27527 No alias deubiquitinase *(UBP12-13) & original description: none 0.02 OrthoFinder output from all 47 species
Smo444302 UBP12 Protein degradation.peptidase families.cysteine-type... 0.05 OrthoFinder output from all 47 species
Spa_g29818 UBP13 deubiquitinase *(UBP12-13) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e017788_P001 UBP12, Zm00001e017788 ubiquitin protease (USP7). deubiquitinase (UBP12-13) 0.05 OrthoFinder output from all 47 species
Zm00001e019687_P003 UBP13, Zm00001e019687 ubiquitin protease (USP7). deubiquitinase (UBP12-13) 0.03 OrthoFinder output from all 47 species
Zm00001e032871_P004 UBP12, Zm00001e032871 ubiquitin protease (USP7). deubiquitinase (UBP12-13) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
BP GO:0016579 protein deubiquitination IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP HCCA
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0004674 protein serine/threonine kinase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
MF GO:0008417 fucosyltransferase activity IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030127 COPII vesicle coat IEP HCCA
MF GO:0031625 ubiquitin protein ligase binding IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
MF GO:0034450 ubiquitin-ubiquitin ligase activity IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
MF GO:0044389 ubiquitin-like protein ligase binding IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
MF GO:0061630 ubiquitin protein ligase activity IEP HCCA
MF GO:0061659 ubiquitin-like protein ligase activity IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR001394 Peptidase_C19_UCH 198 519
IPR024729 USP7_ICP0-binding_dom 623 875
IPR029346 USP_C 885 1094
IPR002083 MATH/TRAF_dom 60 180
No external refs found!