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  5. Solyc10g085410.3.1

Solyc10g085410.3.1 (Solyc10g085410)


Aliases : Solyc10g085410

Description : Cactin OS=Arabidopsis thaliana (sp|f4i2j8|catin_arath : 696.0)


Gene families : OG0007043 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007043_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc10g085410.3.1
Cluster HCCA: Cluster_74

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00051p00095080 evm_27.TU.AmTr_v1... Cactin OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Als_g13386 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g06031 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g57675 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.14G082000.1 Ceric.14G082000 not classified & original description: pacid=50634889... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021493.13 No alias Cactin OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Cre09.g398650 No alias Cactin OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Dcu_g10525 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
LOC_Os03g58590.1 LOC_Os03g58590 Cactin OS=Arabidopsis thaliana (sp|f4i2j8|catin_arath : 644.0) 0.11 OrthoFinder output from all 47 species
Lfl_g18984 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo107633 No alias Cactin OS=Arabidopsis thaliana 0.07 OrthoFinder output from all 47 species
Smo403675 No alias Cactin OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Zm00001e006029_P001 Zm00001e006029 Cactin OS=Arabidopsis thaliana (sp|f4i2j8|catin_arath : 708.0) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000350 generation of catalytic spliceosome for second transesterification step IEP HCCA
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006476 protein deacetylation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016575 histone deacetylation IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
BP GO:0035601 protein deacylation IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0098732 macromolecule deacylation IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR019134 Cactin_C 556 680
IPR018816 Cactin_central 201 398
No external refs found!