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  5. Solyc10g007130.4.1

Solyc10g007130.4.1 (Solyc10g007130)


Aliases : Solyc10g007130

Description : RNA polymerase-IV-positioning factor (SHH). transcription factor (SAWADEE)


Gene families : OG0001794 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001794_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: Solyc10g007130.4.1
Cluster HCCA: Cluster_47

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00011p00262800 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.03 OrthoFinder output from all 47 species
Adi_g002382 No alias RNA polymerase-IV-positioning factor *(SHH) & original... 0.02 OrthoFinder output from all 47 species
Adi_g043959 No alias RNA polymerase-IV-positioning factor *(SHH) & original... 0.02 OrthoFinder output from all 47 species
Als_g01529 No alias RNA polymerase-IV-positioning factor *(SHH) & original... 0.02 OrthoFinder output from all 47 species
Aop_g35425 No alias RNA polymerase-IV-positioning factor *(SHH) & original... 0.02 OrthoFinder output from all 47 species
Ceric.18G005800.1 Ceric.18G005800 RNA polymerase-IV-positioning factor *(SHH) & original... 0.04 OrthoFinder output from all 47 species
Ceric.1Z192200.1 Ceric.1Z192200 RNA polymerase-IV-positioning factor *(SHH) & original... 0.05 OrthoFinder output from all 47 species
LOC_Os06g29020.1 LOC_Os06g29020 RNA polymerase-IV-positioning factor (SHH).... 0.03 OrthoFinder output from all 47 species
Nbi_g12695 No alias RNA polymerase-IV-positioning factor *(SHH) & original... 0.03 OrthoFinder output from all 47 species
Sam_g00809 No alias RNA polymerase-IV-positioning factor *(SHH) & original... 0.03 OrthoFinder output from all 47 species
Sam_g39861 No alias RNA polymerase-IV-positioning factor *(SHH) & original... 0.03 OrthoFinder output from all 47 species
Spa_g15008 No alias RNA polymerase-IV-positioning factor *(SHH) & original... 0.04 OrthoFinder output from all 47 species
Zm00001e009676_P002 Zm00001e009676 RNA polymerase-IV-positioning factor (SHH).... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003713 transcription coactivator activity IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031047 RNA-mediated gene silencing IEP HCCA
BP GO:0031123 RNA 3'-end processing IEP HCCA
BP GO:0031124 mRNA 3'-end processing IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR032001 SAWADEE_dom 161 288
No external refs found!