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  5. Solyc10g005490.4.1

Solyc10g005490.4.1 (EMB1135, Solyc10g005490)


Aliases : EMB1135, Solyc10g005490

Description : Protein FORGETTER 1 OS=Arabidopsis thaliana (sp|f4if36|fgt1_arath : 1003.0)


Gene families : OG0002623 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002623_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc10g005490.4.1

Target Alias Description ECC score Gene Family Method Actions
Adi_g021474 EMB1135 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g16049 EMB1135 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Als_g08125 EMB1135 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene64789.t1 EMB1135, Aspi01Gene64789 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.12G084500.1 EMB1135, Ceric.12G084500 not classified & original description: pacid=50601600... 0.02 OrthoFinder output from all 47 species
Cre01.g053250 EMB1135 Protein FORGETTER 1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Cre02.g095045 EMB1135 Protein FORGETTER 1 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
Cre13.g578501 EMB1135 Protein FORGETTER 1 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Dcu_g13353 EMB1135 not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01036703001 EMB1135 Protein FORGETTER 1 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Gb_10957 EMB1135 Protein FORGETTER 1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
LOC_Os04g52020.1 EMB1135, LOC_Os04g52020 Protein FORGETTER 1 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
LOC_Os08g12680.1 EMB1135, LOC_Os08g12680 Protein FORGETTER 1 OS=Arabidopsis thaliana... 0.07 OrthoFinder output from all 47 species
Lfl_g16816 EMB1135 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Mp1g14790.1 EMB1135 Protein FORGETTER 1 OS=Arabidopsis thaliana... 0.06 OrthoFinder output from all 47 species
Spa_g10872 EMB1135 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Zm00001e041616_P001 EMB1135, Zm00001e041616 Protein FORGETTER 1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0008276 protein methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016278 lysine N-methyltransferase activity IEP HCCA
MF GO:0016279 protein-lysine N-methyltransferase activity IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0018024 histone lysine N-methyltransferase activity IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
MF GO:0042054 histone methyltransferase activity IEP HCCA
MF GO:0043015 gamma-tubulin binding IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR039187 SNO_AAA 180 480
IPR019787 Znf_PHD-finger 659 707
No external refs found!