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  5. Solyc10g004000.1.1

Solyc10g004000.1.1 (DCL1, CAF, EMB76,...)


Aliases : DCL1, CAF, EMB76, SIN1, ATDCL1, EMB60, SUS1, ASU1, Solyc10g004000

Description : endoribonuclease component DCL1 of DCL1-HYL1 miRNA biogenesis complex


Gene families : OG0000378 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000378_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc10g004000.1.1

Target Alias Description ECC score Gene Family Method Actions
AT3G03300 ATDCL2, DCL2 dicer-like 2 0.04 OrthoFinder output from all 47 species
AT5G45150 RTL3 RNAse THREE-like protein 3 0.03 OrthoFinder output from all 47 species
Als_g22807 DCL1, CAF,... endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA... 0.03 OrthoFinder output from all 47 species
Aop_g06264 DCL1, CAF,... endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA... 0.02 OrthoFinder output from all 47 species
Azfi_s0002.g001222 ATDCL3, DCL3 endoribonuclease (DCL4) of transacting siRNA pathway &... 0.05 OrthoFinder output from all 47 species
Dcu_g13692 DCL1, CAF,... endoribonuclease (DCL2) of transacting siRNA pathway &... 0.03 OrthoFinder output from all 47 species
MA_523069g0010 DCL1, CAF,... Endoribonuclease Dicer homolog 1 OS=Oryza sativa subsp.... 0.04 OrthoFinder output from all 47 species
Mp7g11720.1 DCL4, ATDCL4 endoribonuclease (DCL3). endoribonuclease (DCL4) 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0002.g000998 DCL1, CAF,... endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA... 0.03 OrthoFinder output from all 47 species
Solyc11g008530.3.1 ATDCL2, DCL2,... Endoribonuclease Dicer homolog 2 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004525 ribonuclease III activity IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
BP GO:0006396 RNA processing IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
BP GO:0007186 G protein-coupled receptor signaling pathway IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0031683 G-protein beta/gamma-subunit complex binding IEP HCCA
MF GO:0032182 ubiquitin-like protein binding IEP HCCA
MF GO:0032266 phosphatidylinositol-3-phosphate binding IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
MF GO:0043130 ubiquitin binding IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
MF GO:1901981 phosphatidylinositol phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR003100 PAZ_dom 220 355
IPR014720 dsRBD_dom 758 816
IPR000999 RNase_III_dom 618 731
IPR000999 RNase_III_dom 392 540
No external refs found!