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  5. Solyc09g075350.4.1

Solyc09g075350.4.1 (Solyc09g075350)


Aliases : Solyc09g075350

Description : pectin methylesterase


Gene families : OG0000147 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000147_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc09g075350.4.1
Cluster HCCA: Cluster_52

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00230630 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.05 OrthoFinder output from all 47 species
AMTR_s00003p00239700 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.03 OrthoFinder output from all 47 species
AMTR_s00007p00101250 ATPMEPCRA,... Cell wall.pectin.homogalacturonan.modification and... 0.02 OrthoFinder output from all 47 species
AMTR_s00021p00242180 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.02 OrthoFinder output from all 47 species
AMTR_s00040p00188020 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.03 OrthoFinder output from all 47 species
AMTR_s00105p00078750 PME44, ATPME44,... Cell wall.pectin.homogalacturonan.modification and... 0.02 OrthoFinder output from all 47 species
AMTR_s00129p00028250 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.03 OrthoFinder output from all 47 species
AMTR_s00129p00031200 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.03 OrthoFinder output from all 47 species
AT1G02810 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.05 OrthoFinder output from all 47 species
AT1G23200 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.05 OrthoFinder output from all 47 species
AT1G53830 ATPME2, PME2 pectin methylesterase 2 0.05 OrthoFinder output from all 47 species
AT1G53840 PME1, ATPME1 pectin methylesterase 1 0.05 OrthoFinder output from all 47 species
AT2G26440 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.01 OrthoFinder output from all 47 species
AT3G05610 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.03 OrthoFinder output from all 47 species
AT3G10710 RHS12 root hair specific 12 0.03 OrthoFinder output from all 47 species
AT3G14310 ATPME3, PME3 pectin methylesterase 3 0.02 OrthoFinder output from all 47 species
AT3G43270 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.03 OrthoFinder output from all 47 species
AT3G49220 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.04 OrthoFinder output from all 47 species
AT4G02320 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.04 OrthoFinder output from all 47 species
AT4G33220 PME44, ATPME44 pectin methylesterase 44 0.04 OrthoFinder output from all 47 species
AT4G33230 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.03 OrthoFinder output from all 47 species
AT5G04960 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.03 OrthoFinder output from all 47 species
AT5G04970 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.04 OrthoFinder output from all 47 species
AT5G51500 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.05 OrthoFinder output from all 47 species
Adi_g006880 No alias EC_3.1 hydrolase acting on ester bond & original... 0.02 OrthoFinder output from all 47 species
Aev_g06111 No alias EC_3.1 hydrolase acting on ester bond & original... 0.03 OrthoFinder output from all 47 species
Aev_g12056 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g18941 ATPMEPCRF, PMEPCRF EC_3.1 hydrolase acting on ester bond & original... 0.02 OrthoFinder output from all 47 species
Ala_g26378 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g19937 ATPMEPCRF, PMEPCRF EC_3.1 hydrolase acting on ester bond & original... 0.03 OrthoFinder output from all 47 species
Aob_g23889 No alias EC_3.1 hydrolase acting on ester bond & original... 0.02 OrthoFinder output from all 47 species
Aob_g29199 No alias EC_3.1 hydrolase acting on ester bond & original... 0.03 OrthoFinder output from all 47 species
Aop_g08872 No alias EC_3.1 hydrolase acting on ester bond & original... 0.02 OrthoFinder output from all 47 species
Aop_g09872 No alias EC_3.1 hydrolase acting on ester bond & original... 0.02 OrthoFinder output from all 47 species
Aspi01Gene05823.t1 Aspi01Gene05823 EC_3.1 hydrolase acting on ester bond & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0092.g043013 No alias EC_3.1 hydrolase acting on ester bond & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0113.g045942 ATPMEPCRF, PMEPCRF EC_3.1 hydrolase acting on ester bond & original... 0.04 OrthoFinder output from all 47 species
Azfi_s0215.g058412 No alias EC_3.1 hydrolase acting on ester bond & original... 0.04 OrthoFinder output from all 47 species
Ceric.01G014900.1 Ceric.01G014900 EC_3.1 hydrolase acting on ester bond & original... 0.03 OrthoFinder output from all 47 species
Ceric.19G056000.1 ATPMEPCRF,... EC_3.1 hydrolase acting on ester bond & original... 0.04 OrthoFinder output from all 47 species
Ceric.25G038100.1 ATPME2, PME2,... EC_3.1 hydrolase acting on ester bond & original... 0.02 OrthoFinder output from all 47 species
Ceric.25G070900.1 Ceric.25G070900 EC_3.1 hydrolase acting on ester bond & original... 0.02 OrthoFinder output from all 47 species
Ceric.30G016400.1 ATPMEPCRF,... EC_3.1 hydrolase acting on ester bond & original... 0.04 OrthoFinder output from all 47 species
Dac_g21852 No alias EC_3.1 hydrolase acting on ester bond & original... 0.03 OrthoFinder output from all 47 species
Dac_g22798 PME44, ATPME44 EC_3.1 hydrolase acting on ester bond & original... 0.03 OrthoFinder output from all 47 species
Dcu_g01562 No alias EC_3.1 hydrolase acting on ester bond & original... 0.03 OrthoFinder output from all 47 species
Dcu_g11844 ATPMEPCRF, PMEPCRF EC_3.1 hydrolase acting on ester bond & original... 0.03 OrthoFinder output from all 47 species
Dde_g48560 ATPME2, PME2 EC_3.1 hydrolase acting on ester bond & original... 0.03 OrthoFinder output from all 47 species
Ehy_g02809 ATPMEPCRF, PMEPCRF EC_3.1 hydrolase acting on ester bond & original... 0.02 OrthoFinder output from all 47 species
Ehy_g08496 No alias EC_3.1 hydrolase acting on ester bond & original... 0.03 OrthoFinder output from all 47 species
Ehy_g09100 ATPME3, PME3 EC_3.1 hydrolase acting on ester bond & original... 0.02 OrthoFinder output from all 47 species
Ehy_g09155 No alias EC_3.1 hydrolase acting on ester bond & original... 0.04 OrthoFinder output from all 47 species
Ehy_g09868 ATPME2, PME2 EC_3.1 hydrolase acting on ester bond & original... 0.03 OrthoFinder output from all 47 species
Ehy_g10683 No alias EC_3.1 hydrolase acting on ester bond & original... 0.03 OrthoFinder output from all 47 species
Ehy_g15129 No alias EC_3.1 hydrolase acting on ester bond & original... 0.03 OrthoFinder output from all 47 species
Ehy_g16152 No alias EC_3.1 hydrolase acting on ester bond & original... 0.04 OrthoFinder output from all 47 species
Ehy_g27713 No alias EC_3.1 hydrolase acting on ester bond & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01015000001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.04 OrthoFinder output from all 47 species
GSVIVT01016667001 PME1, ATPME1 Cell wall.pectin.homogalacturonan.modification and... 0.03 OrthoFinder output from all 47 species
GSVIVT01023135001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 OrthoFinder output from all 47 species
GSVIVT01026518001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.04 OrthoFinder output from all 47 species
GSVIVT01028040001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.04 OrthoFinder output from all 47 species
GSVIVT01028264001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.04 OrthoFinder output from all 47 species
GSVIVT01028265001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 OrthoFinder output from all 47 species
GSVIVT01031165001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 OrthoFinder output from all 47 species
Gb_06356 No alias pectin methylesterase 0.02 OrthoFinder output from all 47 species
Gb_10522 ATPME3, PME3 pectin methylesterase 0.04 OrthoFinder output from all 47 species
Gb_18512 ATPME3, PME3 pectin methylesterase 0.02 OrthoFinder output from all 47 species
Gb_21388 ATPMEPCRF, PMEPCRF pectin methylesterase 0.04 OrthoFinder output from all 47 species
Gb_24564 ATPME3, PME3 pectin methylesterase 0.01 OrthoFinder output from all 47 species
Gb_28159 ATPMEPCRF, PMEPCRF pectin methylesterase 0.02 OrthoFinder output from all 47 species
Gb_28387 ATPME3, PME3 pectin methylesterase 0.02 OrthoFinder output from all 47 species
Gb_36005 No alias pectin methylesterase 0.02 OrthoFinder output from all 47 species
LOC_Os01g20980.1 ATPMEPCRB, LOC_Os01g20980 pectin methylesterase 0.02 OrthoFinder output from all 47 species
LOC_Os01g21034.1 ATPME3, PME3,... pectin methylesterase 0.05 OrthoFinder output from all 47 species
LOC_Os01g65790.1 LOC_Os01g65790 pectin methylesterase 0.04 OrthoFinder output from all 47 species
LOC_Os02g18650.1 LOC_Os02g18650 pectin methylesterase 0.02 OrthoFinder output from all 47 species
LOC_Os02g54190.1 PME61, LOC_Os02g54190 pectin methylesterase 0.03 OrthoFinder output from all 47 species
LOC_Os03g18860.1 LOC_Os03g18860 pectin methylesterase 0.02 OrthoFinder output from all 47 species
LOC_Os04g38560.1 LOC_Os04g38560 pectin methylesterase 0.02 OrthoFinder output from all 47 species
LOC_Os05g29790.1 ATPMEPCRB, LOC_Os05g29790 pectin methylesterase 0.03 OrthoFinder output from all 47 species
LOC_Os07g47830.1 ATPME3, PME3,... pectin methylesterase 0.04 OrthoFinder output from all 47 species
LOC_Os08g12410.1 LOC_Os08g12410 pectin methylesterase 0.02 OrthoFinder output from all 47 species
LOC_Os08g34910.1 LOC_Os08g34910 pectin methylesterase 0.04 OrthoFinder output from all 47 species
LOC_Os09g26360.1 LOC_Os09g26360 pectin methylesterase 0.03 OrthoFinder output from all 47 species
LOC_Os11g08750.1 LOC_Os11g08750 pectin methylesterase 0.05 OrthoFinder output from all 47 species
LOC_Os11g36240.1 LOC_Os11g36240 pectin methylesterase 0.03 OrthoFinder output from all 47 species
MA_10434624g0010 ATPME2, PME2 Pectinesterase/pectinesterase inhibitor U1 OS=Solanum... 0.03 OrthoFinder output from all 47 species
MA_10434624g0020 ATPME2, PME2 pectin methylesterase 0.03 OrthoFinder output from all 47 species
MA_18093g0010 ATPMEPCRA, PMEPCRA Pectinesterase 2.1 OS=Solanum lycopersicum... 0.03 OrthoFinder output from all 47 species
MA_2017g0010 ATPMEPCRF, PMEPCRF pectin methylesterase 0.03 OrthoFinder output from all 47 species
MA_436039g0010 ATPME2, PME2 pectin methylesterase 0.02 OrthoFinder output from all 47 species
MA_648837g0010 ATPMEPCRF, PMEPCRF pectin methylesterase 0.03 OrthoFinder output from all 47 species
MA_8928694g0010 No alias Probable pectinesterase/pectinesterase inhibitor 32... 0.02 OrthoFinder output from all 47 species
MA_96515g0010 ATPMEPCRB pectin methylesterase 0.03 OrthoFinder output from all 47 species
Nbi_g01365 PME44, ATPME44 EC_3.1 hydrolase acting on ester bond & original... 0.02 OrthoFinder output from all 47 species
Nbi_g12022 No alias EC_3.1 hydrolase acting on ester bond & original... 0.03 OrthoFinder output from all 47 species
Nbi_g13298 No alias EC_3.1 hydrolase acting on ester bond & original... 0.03 OrthoFinder output from all 47 species
Nbi_g19794 No alias EC_3.1 hydrolase acting on ester bond & original... 0.02 OrthoFinder output from all 47 species
Ore_g18095 No alias EC_3.1 hydrolase acting on ester bond & original... 0.03 OrthoFinder output from all 47 species
Ore_g20165 No alias EC_3.1 hydrolase acting on ester bond & original... 0.03 OrthoFinder output from all 47 species
Ore_g22612 No alias EC_3.1 hydrolase acting on ester bond & original... 0.03 OrthoFinder output from all 47 species
Pir_g07009 ATPME2, PME2 EC_3.1 hydrolase acting on ester bond & original... 0.02 OrthoFinder output from all 47 species
Pir_g09647 ATPMEPCRF, PMEPCRF EC_3.1 hydrolase acting on ester bond & original... 0.02 OrthoFinder output from all 47 species
Pir_g22505 No alias EC_3.1 hydrolase acting on ester bond & original... 0.02 OrthoFinder output from all 47 species
Pp3c8_3840V3.1 Pp3c8_3840 Plant invertase/pectin methylesterase inhibitor superfamily 0.01 OrthoFinder output from all 47 species
Ppi_g31109 ATPMEPCRF, PMEPCRF EC_3.1 hydrolase acting on ester bond & original... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0002.g000947 No alias not classified & original description: CDS=1-831 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0047.g013432 No alias EC_3.1 hydrolase acting on ester bond & original... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0086.g018433 No alias EC_3.1 hydrolase acting on ester bond & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0119.g021277 No alias EC_3.1 hydrolase acting on ester bond & original... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0119.g021279 ATPMEPCRF, PMEPCRF EC_3.1 hydrolase acting on ester bond & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0165.g024099 No alias EC_3.1 hydrolase acting on ester bond & original... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0255.g026821 No alias not classified & original description: CDS=300-1226 0.02 OrthoFinder output from all 47 species
Smo114014 ATPMEPCRF, PMEPCRF Cell wall.pectin.homogalacturonan.modification and... 0.03 OrthoFinder output from all 47 species
Smo420760 No alias Cell wall.pectin.homogalacturonan.modification and... 0.05 OrthoFinder output from all 47 species
Smo76314 No alias Cell wall.pectin.homogalacturonan.modification and... 0.01 OrthoFinder output from all 47 species
Solyc02g014300.2.1 Solyc02g014300 pectin methylesterase 0.05 OrthoFinder output from all 47 species
Solyc03g078100.3.1 Solyc03g078100 pectin methylesterase 0.04 OrthoFinder output from all 47 species
Solyc03g083840.3.1 Solyc03g083840 pectin methylesterase 0.05 OrthoFinder output from all 47 species
Solyc03g083870.4.1 Solyc03g083870 pectin methylesterase 0.05 OrthoFinder output from all 47 species
Solyc06g034360.2.1 Solyc06g034360 pectin methylesterase 0.03 OrthoFinder output from all 47 species
Solyc07g017600.3.1 PME44, ATPME44,... pectin methylesterase 0.03 OrthoFinder output from all 47 species
Spa_g04243 PME44, ATPME44 EC_3.1 hydrolase acting on ester bond & original... 0.02 OrthoFinder output from all 47 species
Spa_g06048 No alias EC_3.1 hydrolase acting on ester bond & original... 0.02 OrthoFinder output from all 47 species
Spa_g18353 No alias EC_3.1 hydrolase acting on ester bond & original... 0.02 OrthoFinder output from all 47 species
Tin_g20566 No alias EC_3.1 hydrolase acTing on ester bond & original... 0.01 OrthoFinder output from all 47 species
Tin_g28885 ATPME2, PME2 EC_3.1 hydrolase acTing on ester bond & original... 0.02 OrthoFinder output from all 47 species
Zm00001e022184_P001 PME44, ATPME44,... pectin methylesterase 0.03 OrthoFinder output from all 47 species
Zm00001e034231_P001 Zm00001e034231 pectin methylesterase 0.03 OrthoFinder output from all 47 species
Zm00001e035838_P001 Zm00001e035838 pectin methylesterase 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004857 enzyme inhibitor activity IEA Interproscan
MF GO:0030599 pectinesterase activity IEA Interproscan
BP GO:0042545 cell wall modification IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000502 proteasome complex IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0004568 chitinase activity IEP HCCA
MF GO:0004650 polygalacturonase activity IEP HCCA
BP GO:0006022 aminoglycan metabolic process IEP HCCA
BP GO:0006026 aminoglycan catabolic process IEP HCCA
BP GO:0006030 chitin metabolic process IEP HCCA
BP GO:0006032 chitin catabolic process IEP HCCA
BP GO:0006040 amino sugar metabolic process IEP HCCA
MF GO:0008131 primary amine oxidase activity IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
BP GO:0009308 amine metabolic process IEP HCCA
BP GO:0009894 regulation of catabolic process IEP HCCA
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP HCCA
MF GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
BP GO:0016998 cell wall macromolecule catabolic process IEP HCCA
BP GO:0042176 regulation of protein catabolic process IEP HCCA
BP GO:0044036 cell wall macromolecule metabolic process IEP HCCA
BP GO:0046348 amino sugar catabolic process IEP HCCA
MF GO:0048038 quinone binding IEP HCCA
BP GO:0051246 regulation of protein metabolic process IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:1901071 glucosamine-containing compound metabolic process IEP HCCA
BP GO:1901072 glucosamine-containing compound catabolic process IEP HCCA
BP GO:1901136 carbohydrate derivative catabolic process IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA
CC GO:1905368 peptidase complex IEP HCCA
CC GO:1905369 endopeptidase complex IEP HCCA
InterPro domains Description Start Stop
IPR000070 Pectinesterase_cat 248 544
IPR006501 Pectinesterase_inhib_dom 49 196
No external refs found!