1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc08g150138.1.1

Solyc08g150138.1.1 (Solyc08g150138)


Aliases : Solyc08g150138

Description : no hits & (original description: none)


Gene families : OG0001835 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001835_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc08g150138.1.1
Cluster HCCA: Cluster_74

Target Alias Description ECC score Gene Family Method Actions
AT2G25670 No alias BEST Arabidopsis thaliana protein match is: copper ion... 0.11 OrthoFinder output from all 47 species
AT4G32610 No alias copper ion binding 0.03 OrthoFinder output from all 47 species
Ceric.05G058400.1 Ceric.05G058400 not classified & original description: pacid=50577638... 0.03 OrthoFinder output from all 47 species
MA_12301g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Ore_g08842 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g45058 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo444781 No alias No description available 0.04 OrthoFinder output from all 47 species
Spa_g07750 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000350 generation of catalytic spliceosome for second transesterification step IEP HCCA
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
BP GO:0000469 cleavage involved in rRNA processing IEP HCCA
CC GO:0005681 spliceosomal complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP HCCA
BP GO:0090501 RNA phosphodiester bond hydrolysis IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA

No InterPro domains available for this sequence

No external refs found!