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  5. Solyc08g077260.3.1

Solyc08g077260.3.1 (Solyc08g077260)


Aliases : Solyc08g077260

Description : Vacuolar protein sorting-associated protein 55 homolog OS=Arabidopsis thaliana (sp|q9ast6|vsp55_arath : 174.0)


Gene families : OG0002136 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002136_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc08g077260.3.1
Cluster HCCA: Cluster_148

Target Alias Description ECC score Gene Family Method Actions
AT1G32410 No alias Vacuolar protein sorting 55 (VPS55) family protein 0.04 OrthoFinder output from all 47 species
Adi_g047016 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g00350 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g08210 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g63058 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.04G011500.1 Ceric.04G011500 not classified & original description: pacid=50630507... 0.04 OrthoFinder output from all 47 species
Ehy_g04242 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
LOC_Os01g73570.2 LOC_Os01g73570 Vacuolar protein sorting-associated protein 55 homolog... 0.03 OrthoFinder output from all 47 species
LOC_Os02g55980.1 LOC_Os02g55980 Vacuolar protein sorting-associated protein 55 homolog... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
MF GO:0015078 proton transmembrane transporter activity IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
CC GO:0030532 small nuclear ribonucleoprotein complex IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
CC GO:0046540 U4/U6 x U5 tri-snRNP complex IEP HCCA
CC GO:0097525 spliceosomal snRNP complex IEP HCCA
CC GO:0097526 spliceosomal tri-snRNP complex IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
BP GO:0098660 inorganic ion transmembrane transport IEP HCCA
BP GO:0098662 inorganic cation transmembrane transport IEP HCCA
CC GO:0120114 Sm-like protein family complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1902600 proton transmembrane transport IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR007262 Vps55/LEPROT 18 129
No external refs found!